View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4031_low_2 (Length: 291)
Name: NF4031_low_2
Description: NF4031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4031_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 51111028 - 51111302
Alignment:
| Q |
1 |
aatataaaaagatttgaatgaatgtatgtgtnnnnnnnttatgttaacaatttagaaatgaaattcataattaat-atattttggtacataaaaataaat |
99 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51111028 |
aatataaaaagatttgaatgaatgtatgtttaaaaaaattatgttaacaatttagaaatgaaattcataattaattatattttggtacataaaaataaat |
51111127 |
T |
|
| Q |
100 |
tattcatacaaattggagtatatatagggggaatggtgactattattttttaagctcttaagaaacaaaaacatattcgacttgacacaaaatgttctga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51111128 |
tattcatacaaattggagtatatatagggggaatggtgactattattttttaagctcttaagaaacaaaaacatattcgacttgatacaaaatgttctga |
51111227 |
T |
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| Q |
200 |
catgtgctatgtggttgctatcatgagagaccaaacacagcactagcaaacaacaaaacaaagaaaaagattact |
274 |
Q |
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| T |
51111228 |
cttgtgctatgtggttgctatcatgagagaccaaacacagcactagcaaacaacaaaacaaagaaaaagattact |
51111302 |
T |
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