View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4032_high_1 (Length: 878)

Name: NF4032_high_1
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4032_high_1
NF4032_high_1
[»] chr3 (1 HSPs)
chr3 (15-861)||(47585409-47586272)


Alignment Details
Target: chr3 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 15 - 861
Target Start/End: Original strand, 47585409 - 47586272
Alignment:
Q  15 cagagaggtggatgccgggaaagtttgatattgctggccatagtcaccaactttttcatgtcttggttgtggcgggggcatatacacattaccgtgatgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47585409 cagagaggtggatgccgggaaagtttgatattgctggccatagtcaccaactttttcatgtcttggttgtggcgggggcatatacacattaccgtgatgg 47585508  T
Q  115 gttaatttaccttagatggagagatttgaaaggctgttaattaggccggtagggagtctgttgtaggtactttggctttctttttgttgttcaaaactta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47585509 gttaatttaccttagatggagagatttgaaaggctgttaattaggccggtagggagtctgttgtaggtactttggctttctttttgttgttcaaaactta 47585608  T
Q  215 gagatattggatgaaagatgaagaaagtgattgtgtattattgtatagaaaaaagctccatgcttcttttttgtgttagatttatgaatctaaaaacaaa 314  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47585609 ga--tattggatgaaagatgaagaaagtgattgtgtattattgtatagaaaaaagcttcatgcttcttttttgtgttagatttatgaatctaaaaacaaa 47585706  T
Q  315 gaggtaaatctaagagaatacatggattttttgttctatcaaaagtatgtagtatattacatgtaaatccttcaaatattatctttggaacaataattta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  47585707 gaggtaaatctaagagaatacatggattttttgttctatcaaaagtatgtagtata---catgtaaatccttcaaatattatctttggaacaataattta 47585803  T
Q  415 agaacattccctgaggcggcattttagatgttgtaaatgaagtgttgttagcttattacatgcatgaactgtgagaattttttgtatatagacttgtatg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47585804 agaacattccctgaggcggcattttagatgttgtaaatgaagtgttgttagcttattacatgcatgaactgtgagaattttttgtatatagacttgtatg 47585903  T
Q  515 cttttgtgaaatttacatatttgagtgtgctccactaatttttcaaaattctgtggcatccgtagaagttgatccaccatgtaattgaagtgttgccatt 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47585904 cttttgtgaaatttacatatttgagtgtgctccactaatttttcaaaattctgtggcatccgtagaagttgatccaccatttaattgaagtgttgccatt 47586003  T
Q  615 cgaatactgaagttttaggtgatgtgttttttc------------------ttttttaataagttattcttcaagaaataactccnnnnnnnnnnnnnnn 696  Q
    |||||||||||||||||||||||||||||||||                  |||| |||||||||||||||||||||||||||||                   
T  47586004 cgaatactgaagttttaggtgatgtgttttttcaaacatgatttgtttttcttttataataagttattcttcaagaaataactcc------aaaaaaaaa 47586097  T
Q  697 nnnnnntttgcaactagaggaggattattttatttannnnnnncctcctaagattatctaacggagttaatcatgttcaagacgtgtggataat------ 790  Q
          |||||||||  |||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||| |||||||||||          
T  47586098 aaacattttgcaact--aggaggattattttatttatttttttcctcctaagattctctaacggagttaatcatgttcaagatgtgtggataatagatgc 47586195  T
Q  791 ------aacctagataaatgtcattctagttttctcttttgaagatagatttcacattaactgacaagacttaagat 861  Q
          |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47586196 gatctgaacctagataaatgtcattctaattttctcttttgaagatagatttcacattaactgacaagacttaagat 47586272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University