View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_10 (Length: 528)
Name: NF4032_high_10
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 4 - 512
Target Start/End: Complemental strand, 2378607 - 2378090
Alignment:
| Q |
4 |
tattgagagagacgtgttatgttatgaatttaatagtttatgaataatgtatccatcaatttatgttaattatcaaaagaaggctagaaataaaataagg |
103 |
Q |
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| T |
2378607 |
tattgagcgagacgtgttatgttatgaatttaatagtttatgaataatgtatccatcaatttatgttaattatcaaaagaaggctagaaataaaataagg |
2378508 |
T |
|
| Q |
104 |
aaaatatatta---acattaccttcaaccatcaaaatggagttgattcaactactacatagaaactaatcaaagtgcacttagaatcagtaaaaggctac |
200 |
Q |
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| T |
2378507 |
aaaatatattatatacattaccttcaaccatcaaaatggagttgattcaactactaaatagaaactaatcaaagtgcacttagaatcagtaaaaggttac |
2378408 |
T |
|
| Q |
201 |
acaaacacaacaaagacatgttttgtcaaaatattcatgctagaaatagagataaatggatcgaattaaacctttcaattctacccnnnnnnngaaaggc |
300 |
Q |
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| T |
2378407 |
acaaacacaacaaagacatgttttgtcaaaatattcatgcaagaaatagagataaatggatcgaattaaacctttcaattctacccaaaaaaagaaaggc |
2378308 |
T |
|
| Q |
301 |
aaaagaagctctacattcttgaaacaaaagggtacatgaatacagcagaataaaaaataacacagtcaacaagttgaccatgcaaaaatatgactaaaaa |
400 |
Q |
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| T |
2378307 |
aaaagaagctctacattcttgaaacaaaagggtacatgaatacagcagaataaaaaataacacagtcaacaagttgaccatgcaaaaatatgactaaaaa |
2378208 |
T |
|
| Q |
401 |
acccttctgcaaaatgaaccttcagagcaaacatttttcgaaaatgattaaatgacatactatacccacc------acatgattattacttataaagagc |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2378207 |
acccttctgcaaaatgaaccttcagagcaaacatttttcgaaaatgattcaatgacatactatacccaccatgcaaacatgattattacttataaagagc |
2378108 |
T |
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| Q |
495 |
ataaaatttaactgcttt |
512 |
Q |
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|||||||||||||||||| |
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| T |
2378107 |
ataaaatttaactgcttt |
2378090 |
T |
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