View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_12 (Length: 501)
Name: NF4032_high_12
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Complemental strand, 39673359 - 39672895
Alignment:
| Q |
14 |
agggcctataaatccatcaactgattgtgaagcatatcggtataccagcaactttgtacggcattgggcacattttcaatatgaatttccagtccatctt |
113 |
Q |
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| T |
39673359 |
agggcctataaatccatcaactgattgtgaagcatatcggtataccagcaactttgtacggcattgggcagattttcaatatgaatttccagttcatctt |
39673260 |
T |
|
| Q |
114 |
tttggtttgactaacaagaaaatggacctaaaaattaatatgatatgacagtggtcagaaattaaacaggtttcgttctttgttccaagtagttttacta |
213 |
Q |
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| T |
39673259 |
tttggtttgactaacaagaaaatggacctaaaaattaatatgatatgacagtggtcagaatttaaacaggtttcgttctttgttccaagtagttttacta |
39673160 |
T |
|
| Q |
214 |
tcaagacctgccctagcattaataannnnnnnnnnnnnnntacgtaccagtactagtagtgcatgatttcttaattggaaaatgtcattacagtggtcct |
313 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39673159 |
tcaagacctgccctagcattaataatttttttaaaaaaaatacgtaccagtactagtagtgcatgatttcttaattggaaaatgtcattacagtggtcct |
39673060 |
T |
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| Q |
314 |
gtaattcgggtttgcttggaccatttaaggccatttaagcaattaactgtccttaaaaacataaagcttgtgatatgatttgtaggtgagtatgttgaaa |
413 |
Q |
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|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39673059 |
gtaattcgggtttgtttgga----------ccatttaagcaattaattgtccttaaaaacataaagcttgtgatatgatttgtaggtgagtatgttgaaa |
39672970 |
T |
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| Q |
414 |
atgcaagttccagttactttaagctgtcaaaatgccaaacatctttggattccaaggcttgacatgcacagatct |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39672969 |
atgcaagttccagttactttaagctgtcaaaatgccaaacatctttggattccaaggcttgacatgcacagatct |
39672895 |
T |
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