View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_18 (Length: 423)
Name: NF4032_high_18
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 54102168 - 54102573
Alignment:
| Q |
1 |
tgtgaaatatctctataagatcacctacatgcgattttttattgaatatatatgaataataaagtttttaaactttgataccgataatgtatatgaatta |
100 |
Q |
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| T |
54102168 |
tgtgaaatatctctataagatcatctacatgcgattttttattgaatatatatgaataataaagtttttaaactttgataccgataatgtatatgaatta |
54102267 |
T |
|
| Q |
101 |
aatcatccatttacataattttatcaaagnnnnnnnnttgacttttatttattcagaagaacatttttctggaacaattaattcnnnnnnnggtgttgnn |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54102268 |
aatcatccatttacataattttatcaaagaaaaaaaattgacttttatttattcagaagaacatttttctggaacaattaattctttttttggtgttgaa |
54102367 |
T |
|
| Q |
201 |
nnnnnnncattttatttgatacatgaaagtattatgttctaaaacacttacttaatagtttatgcgatctctagctagcattttcaagaaatggataatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54102368 |
aaaaaa-cattttatttgatacatgaaagtattatgttctaaaacacttacttaatagtttatgcgatctctagctagcattttcaagaaatggataatc |
54102466 |
T |
|
| Q |
301 |
agtatatccaacaacaggatcattggtgtaaaaagtgctcttatcagccttgttcaattgggtatccaattcaaatcttctaggcagatcaggatttgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54102467 |
agtatatccaacaacaggatcattggtgtaaaaagtgctcttatcagccttgttcaattgggtatccaattcaaatcttctaggcagatcaggatttgcc |
54102566 |
T |
|
| Q |
401 |
aaaaaga |
407 |
Q |
| |
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||||||| |
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| T |
54102567 |
aaaaaga |
54102573 |
T |
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