View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4032_high_2 (Length: 776)

Name: NF4032_high_2
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4032_high_2
NF4032_high_2
[»] chr8 (14 HSPs)
chr8 (14-759)||(5886574-5887319)
chr8 (384-759)||(5848983-5849361)
chr8 (384-759)||(5842273-5842651)
chr8 (14-228)||(5842966-5843180)
chr8 (14-228)||(5849708-5849922)
chr8 (14-168)||(5984557-5984711)
chr8 (14-168)||(5949029-5949183)
chr8 (16-164)||(5960298-5960446)
chr8 (14-153)||(5921152-5921291)
chr8 (384-728)||(5983558-5983911)
chr8 (384-725)||(5959043-5959393)
chr8 (384-728)||(5947957-5948298)
chr8 (384-728)||(5920371-5920727)
chr8 (18-91)||(39916637-39916710)
[»] chr2 (3 HSPs)
chr2 (14-145)||(42788930-42789061)
chr2 (409-476)||(42788744-42788811)
chr2 (18-48)||(27172818-27172848)
[»] chr7 (2 HSPs)
chr7 (14-73)||(45676080-45676139)
chr7 (18-64)||(48892630-48892676)
[»] chr3 (3 HSPs)
chr3 (18-68)||(44674039-44674089)
chr3 (18-73)||(34626700-34626755)
chr3 (415-461)||(34626445-34626491)
[»] chr5 (1 HSPs)
chr5 (18-68)||(1281333-1281383)
[»] chr1 (3 HSPs)
chr1 (18-68)||(16127411-16127461)
chr1 (415-461)||(51044689-51044735)
chr1 (21-74)||(37962871-37962924)


Alignment Details
Target: chr8 (Bit Score: 710; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 14 - 759
Target Start/End: Complemental strand, 5887319 - 5886574
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887319 gcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 5887220  T
Q  114 gaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattc 213  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887219 gaactacacaacattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattc 5887120  T
Q  214 tcaaagttcaaaaggttgattatactctttccggtttcaaataagtgtctctctttttcaattggatcttaaatttttccctttaaatttaatgataaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887119 tcaaagttcaaaaggttgattatactctttccggtttcaaataagtgtctctctttttcaattggatcttaaatttttccctttaaatttaatgataaaa 5887020  T
Q  314 tgacacttattttaaaagggaagggacggtctacttatttttccctcaacaagatttgaactgtttggactttgcacagatgggcacaaattgctaagca 413  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5887019 tgacacttattttaaaacggaagggacggtctactcatttttccctcaacaagatttgaactgtttggactttggacagatgggcacaaattgctaagca 5886920  T
Q  414 cttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcatttcttacgataatgttccatctttcaccccattt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  5886919 cttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcatgaagaaaaaactcatttcttatgataatgttccatctttcaccccattt 5886820  T
Q  514 tatgatattcacatcccctacaataccggttctaagaaaagtttctttcctttaaatgcaaaccctaatgtgatcctaaacttcaatccttaccatcaag 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886819 tatgatattcacatcccctacaataccggttctaagaaaagtttctttcctttaaatgcaaaccctaatgtgatcctaaacttcaatccttaccatcaag 5886720  T
Q  614 atctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtagacatcaataacaatttcaatgccaagttcctacc 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5886719 atctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtagacatcaataacaatttcaatgccaagttcccacc 5886620  T
Q  714 cattcaaaatccaattatacctgaaatagtactaccatctaatcct 759  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  5886619 caatcaaaatccaattatacctgaaatagtactaccatctaatcct 5886574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 384 - 759
Target Start/End: Complemental strand, 5849361 - 5848983
Alignment:
Q  384 tttgcacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcatttct 483  Q
    |||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5849361 tttggacagatgggcacaaattaccaagcacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 5849262  T
Q  484 tacgataatgttccatctttcaccccattttatgat---attcacatcccctacaataccggttctaagaaaagtttctttcctttaaatgcaaacccta 580  Q
     | |||| ||||||||| ||||||||||||||||||   |||||| || |||||| |   |||| |||| ||| ||| ||||||||||||||||||||||    
T  5849261 gatgatattgttccatccttcaccccattttatgatgatattcacctctcctacagtgatggttttaaggaaactttttttcctttaaatgcaaacccta 5849162  T
Q  581 atgtgatcctaaacttcaatccttaccatcaagatctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtaga 680  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || | ||||||| ||||||||||||| ||| ||| ||||| ||||||    
T  5849161 atgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaatggtaga 5849062  T
Q  681 catcaataacaatttcaatgccaagttcctacccattcaaaatccaattatacctgaaatagtactaccatctaatcct 759  Q
    |||||||||| ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5849061 catcaataaccatttcaatgccagattcctacccaatcaaaatccaattatacctgaaatagtactaccatctaatcct 5848983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 384 - 759
Target Start/End: Complemental strand, 5842651 - 5842273
Alignment:
Q  384 tttgcacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcatttct 483  Q
    |||| ||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5842651 tttggacagatgggcacaaattgccaagtacttgccaggaagaaccgataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 5842552  T
Q  484 tacgataatgttccatctttcaccccattttatgat---attcacatcccctacaataccggttctaagaaaagtttctttcctttaaatgcaaacccta 580  Q
     | |||| ||||||||| ||||||||||||||||||   |||||| || |||||| |   |||| |||| ||| ||| ||||||||||||||||||||||    
T  5842551 gatgatattgttccatccttcaccccattttatgatgatattcacctctcctacagtgatggttttaaggaaactttttttcctttaaatgcaaacccta 5842452  T
Q  581 atgtgatcctaaacttcaatccttaccatcaagatctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtaga 680  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || | ||||||| ||||||||||||| ||| ||| ||||| ||||||    
T  5842451 atgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaatggtaga 5842352  T
Q  681 catcaataacaatttcaatgccaagttcctacccattcaaaatccaattatacctgaaatagtactaccatctaatcct 759  Q
    |||||||||| ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5842351 catcaataaccatttcaatgccagattcctacccaatcaaaatccaattatacctgaaatagtactaccatctaatcct 5842273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 5843180 - 5842966
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 113  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||| ||    
T  5843180 gcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctcttatgaagaagtagcaatcattata 5843081  T
Q  114 gaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||||||||| |||| |||||||||||    
T  5843080 gaactacacagcattctaggcaataggtatatccattacaatagctcttcttcttttcctccaatgttattttcatgtcaatcattaccatttattattc 5842981  T
Q  214 tcaaagttcaaaagg 228  Q
    |||||||||||||||    
T  5842980 tcaaagttcaaaagg 5842966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 5849922 - 5849708
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 113  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||    
T  5849922 gcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctcttatgaagaagtagcaatcattata 5849823  T
Q  114 gaactacacagcattctaggcaataggtatatccattacaatagctctttttcttttcctccgatgtgcttttcatgtcaatctttacaatttattattc 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||  |||||||||||||| |||| |||||||||||    
T  5849822 gaactacacagcattctaggcaataggtatatccattacaattgctcttcttcttttcctccaatgttattttcatgtcaatcattaccatttattattc 5849723  T
Q  214 tcaaagttcaaaagg 228  Q
    |||||||||||||||    
T  5849722 tcaaagttcaaaagg 5849708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 5984711 - 5984557
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984711 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 5984612  T
Q  114 gaactacacagcattctaggcaataggtatatccattacaatagctctttttctt 168  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  5984611 gaactacacaacattctaggcaataggtatattcattacattagctctctttctt 5984557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 5949183 - 5949029
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5949183 gcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 5949084  T
Q  114 gaactacacagcattctaggcaataggtatatccattacaatagctctttttctt 168  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  5949083 gaactacacaacattctaggcaataggtatattcattacattagctctctttctt 5949029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 5960446 - 5960298
Alignment:
Q  16 agagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtaga 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5960446 agagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaagtagcactcattgtaga 5960347  T
Q  116 actacacagcattctaggcaataggtatatccattacaatagctctttt 164  Q
    ||| |||| |||| |||||||||||||||| ||||||| ||||||||||    
T  5960346 actccacaacattttaggcaataggtatattcattacattagctctttt 5960298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 5921291 - 5921152
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||    
T  5921291 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattcta 5921192  T
Q  114 gaactacacagcattctaggcaataggtatatccattaca 153  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  5921191 gaactccacagcattctaggcaataggtatattcattaca 5921152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 384 - 728
Target Start/End: Complemental strand, 5983911 - 5983558
Alignment:
Q  384 tttgcacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcatttct 483  Q
    |||| |||||||||| || ||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| || ||| |    
T  5983911 tttggacagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccataaagaagaaaatcctttgt 5983812  T
Q  484 tacgataatgttccatctttcaccccattttatgatattcacatcccctac---aataccggttctaagaaaagtttctttcctttaaatgcaaacccta 580  Q
     | |||| | |||||||||||||| |||||| ||| ||||||| |||||||   ||||  ||||| | | |||  |  || |||||||||||||||||||    
T  5983811 catgatattattccatctttcaccacattttctgaaattcacaccccctaccataatattggttcaatggaaaactcattccctttaaatgcaaacccta 5983712  T
Q  581 atgtgatcctaaacttcaatcctt---accatcaagatctcctatacctttcaaattcatttccaaatctgcaatg---ttttcaacaacctgatacaaa 674  Q
    |||||||||| |||||||||| ||   |||||||||||  |||||||| |||||  |||| ||||||||| ||| |   |||||| |||  |||||||||    
T  5983711 atgtgatcctcaacttcaatcattataaccatcaagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaa 5983612  T
Q  675 ggtagacatcaataacaatttcaatgccaagttcctacccattcaaaatccaat 728  Q
    ||||||||||||| || |||  |||||||| ||||  | |||||||||||||||    
T  5983611 ggtagacatcaatgaccattataatgccaatttccctcacattcaaaatccaat 5983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 384 - 725
Target Start/End: Complemental strand, 5959393 - 5959043
Alignment:
Q  384 tttgcacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaa-aaaactcatttc 482  Q
    |||| |||||||||| || ||||| || |||||| | |||||||| ||||||||||||||||||||||||||||| | ||||||||| |||| ||| |||    
T  5959393 tttggacagatgggctcagattgcaaaacacttaactggaagaacagataatgaggtgaaaaacttttggaattctaccataaagaagaaaattca-ttc 5959295  T
Q  483 ttacgataatgttccatctttcaccccattttatgatattcacatcccctac---aataccggttctaagaaaagtttctttcctttaaatgcaaaccct 579  Q
    | |||||| |  ||||||||||| | |||||| |||| |||||| ||| |||   ||||| ||||| | | |||  | ||| |||||||||||||||||     
T  5959294 tcacgatattactccatctttcatcacattttctgatgttcacaccccataccataatactggttcaatggaaaactccttccctttaaatgcaaacccg 5959195  T
Q  580 aatgtgatcctaaacttca---atccttaccatcaagatctcctatacctttcaaattcatttccaaatctgcaatg---ttttcaacaacctgatacaa 673  Q
    ||||||| ||| |||||||   ||| | |||||||||||  |||||||| |||||  |||| |||||||| |||| |   |||||| |||  ||||||||    
T  5959194 aatgtgaccctcaacttcaatcatcatcaccatcaagattacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaa 5959095  T
Q  674 aggtagacatcaataacaatttcaatgccaagttcctacccattcaaaatcc 725  Q
    |||||||||||||| || |||  |||||||| ||||| | ||||||||||||    
T  5959094 aggtagacatcaatgaccattataatgccaatttccttcacattcaaaatcc 5959043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 384 - 728
Target Start/End: Complemental strand, 5948298 - 5947957
Alignment:
Q  384 tttgcacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcatttct 483  Q
    |||| |||||||||| |||||||| ||||||||||| |||||||| ||||||||| | ||||||||||||||||||| ||||||||||||| || |||||    
T  5948298 tttggacagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattcaaccataaagaaaaaaatcctttct 5948199  T
Q  484 tacgataatgttccatctttcaccccattttatgatattcacatcccctacaataccggttctaagaaaagtttctttcctttaaatgcaaaccctaatg 583  Q
     | | || | |||||||||||||| |||||| ||||           | | ||||  ||||| | | |||  |  || ||||||||||||||||||||||    
T  5948198 catggtattattccatctttcaccacattttctgat---------gaccataatattggttcaatggaaaactcattccctttaaatgcaaaccctaatg 5948108  T
Q  584 tgatcctaaacttcaatcctt---accatcaagatctcctatacctttcaaattcatttccaaatctgcaatg---ttttcaacaacctgatacaaaggt 677  Q
    ||||||| |||||||||| ||   |||||||||||  |||||||| |||||  |||| ||||||||| ||| |   |||||| |||  ||||||||||||    
T  5948107 tgatcctcaacttcaatcattataaccatcaagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaaggt 5948008  T
Q  678 agacatcaataacaatttcaatgccaagttcctacccattcaaaatccaat 728  Q
    |||||||||| || |||  |||||||| ||||  | |||||||||||||||    
T  5948007 agacatcaatgaccattataatgccaatttccctctcattcaaaatccaat 5947957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 384 - 728
Target Start/End: Complemental strand, 5920727 - 5920371
Alignment:
Q  384 tttgcacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcatttct 483  Q
    |||| |||| ||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||  ||||    
T  5920727 tttggacaggtgggctcagattgcgaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaaatcccttct 5920628  T
Q  484 tacgataatgttccatctttcaccccattttatgatattcacatcccctac------aataccggttctaagaaaagtttctttcctttaaatgcaaacc 577  Q
     | | ||   ||||||||||| || |||||| | ||||||||| |||||||      ||||  ||||||| | |||||||  | ||| ||||||||||||    
T  5920627 catggtatctttccatctttccccacattttctaatattcacaccccctacaataaaaatattggttctatggaaagtttactccctataaatgcaaacc 5920528  T
Q  578 ctaatgtgatcctaaacttcaatccttaccatcaagatctcctatacctttcaaattcatttccaaatctgcaatg---ttttcaacaacctgatacaaa 674  Q
    |||||||||| ||||| ||||| | | ||||| ||||||  |||| |  | |||  |||| ||||||||| ||| |   |||||| |||  |||||||||    
T  5920527 ctaatgtgattctaaatttcaaccatcaccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcaccaaattgatacaaa 5920428  T
Q  675 ggtagac---atcaataacaatttcaatgccaagttcctacccattcaaaatccaat 728  Q
    |||||||   ||||||||| |||  |||| ||| ||||| | |||||||||||||||    
T  5920427 ggtagacatgatcaataaccattataatggcaatttccttcacattcaaaatccaat 5920371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 39916637 - 39916710
Alignment:
Q  18 agatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctca 91  Q
    ||||||||||| || |||||||| |||||||| |||||||| ||||||||| | || ||||||| |||| ||||    
T  39916637 agatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactca 39916710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 42789061 - 42788930
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 113  Q
    ||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || ||| |     
T  42789061 gcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattatt 42788962  T
Q  114 gaactacacagcattctaggcaataggtatat 145  Q
    ||||| || | ||||||||| || ||||||||    
T  42788961 gaacttcataccattctaggaaacaggtatat 42788930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 42788811 - 42788744
Alignment:
Q  409 aagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaact 476  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  42788811 aagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaact 42788744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 27172848 - 27172818
Alignment:
Q  18 agatgtggaaagagttgcagattaagatgga 48  Q
    |||||||||||||||||||||||||||||||    
T  27172848 agatgtggaaagagttgcagattaagatgga 27172818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 45676139 - 45676080
Alignment:
Q  14 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 73  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  45676139 gcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 48892676 - 48892630
Alignment:
Q  18 agatgtggaaagagttgcagattaagatggataaattatctaagacc 64  Q
    ||||||||||| ||||||||| |||||||||| || |||||||||||    
T  48892676 agatgtggaaaaagttgcagactaagatggatgaactatctaagacc 48892630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 44674039 - 44674089
Alignment:
Q  18 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 68  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  44674039 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 34626755 - 34626700
Alignment:
Q  18 agatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 73  Q
    ||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||    
T  34626755 agatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 34626491 - 34626445
Alignment:
Q  415 ttaccaggaagaacggataatgaggtgaaaaacttttggaattcaag 461  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||    
T  34626491 ttaccaggtagaacggataatgagattaaaaacttttggaattcaag 34626445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  18 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 68  Q
    ||||||||||||||||| || |||||||||| ||||||| |||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 16127461 - 16127411
Alignment:
Q  18 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 68  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 51044689 - 51044735
Alignment:
Q  415 ttaccaggaagaacggataatgaggtgaaaaacttttggaattcaag 461  Q
    |||||||| ||||| ||||||||| | ||||||||||||||||||||    
T  51044689 ttaccagggagaacagataatgagataaaaaacttttggaattcaag 51044735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 37962871 - 37962924
Alignment:
Q  21 tgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaa 74  Q
    ||||| ||||||||||| |||||||||||||||||  | || ||||||||||||    
T  37962871 tgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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