View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_20 (Length: 411)
Name: NF4032_high_20
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 36 - 297
Target Start/End: Original strand, 39696562 - 39696819
Alignment:
| Q |
36 |
aaacaatagaatatatttcaagcaattacaaaataaaacaattagcatttagcagaagtgtgttaacaaatatgcttaaacgtatttattctagttatga |
135 |
Q |
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| T |
39696562 |
aaacaataaaatatatttcaaaccattgcaaaataaaacaattagcaattagcagcagtgtgttaacaaatatgcttaaacatgtttat---agttatga |
39696658 |
T |
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| Q |
136 |
aactccattcagcagggagccaatgcaagtgtaaatcctgacggtaacacaggaaaagtcgatattacgattacttatcctacatcatatgccctaagaa |
235 |
Q |
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| T |
39696659 |
aactccattcagccaggaaccaattcaagtgtaactcctgatggtaaaacaggaaaagtcgatactgcgattatttatcctacatcatatgcactaagaa |
39696758 |
T |
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| Q |
236 |
acaagaatttagaaaccaaaagagagcgcacgtgaatccaataaaactattgttgatagaaa |
297 |
Q |
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| T |
39696759 |
acaagaatttagaaacccaaagagggc-aacgtgaatccaataaaactactgttaatagaaa |
39696819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 39696889 - 39696948
Alignment:
| Q |
291 |
atagaaatcttgtaataataaggttaagcatgcataaagcaatgtgatcaacaaaatgtg |
350 |
Q |
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| T |
39696889 |
atagaaaacttgcaataataaggttaagcatgcatagagcaatgtgatcaacaaaatgtg |
39696948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 404
Target Start/End: Original strand, 39696991 - 39697022
Alignment:
| Q |
373 |
aattgaacagcctggtcaaacatccttctctg |
404 |
Q |
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| T |
39696991 |
aattgaacagcctggtcaaacatccttctctg |
39697022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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