View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4032_high_23 (Length: 400)

Name: NF4032_high_23
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4032_high_23
NF4032_high_23
[»] chr7 (2 HSPs)
chr7 (266-383)||(25248654-25248771)
chr7 (42-122)||(32803684-32803765)
[»] chr4 (5 HSPs)
chr4 (3-122)||(21392567-21392685)
chr4 (42-121)||(20381349-20381428)
chr4 (8-122)||(27051046-27051160)
chr4 (62-121)||(39158103-39158162)
chr4 (43-119)||(52263874-52263950)
[»] chr8 (3 HSPs)
chr8 (42-119)||(10902705-10902781)
chr8 (62-120)||(15716990-15717048)
chr8 (42-94)||(37133857-37133909)
[»] chr5 (2 HSPs)
chr5 (62-122)||(19982000-19982060)
chr5 (7-73)||(31683454-31683521)
[»] chr2 (1 HSPs)
chr2 (62-122)||(1416053-1416113)
[»] chr6 (2 HSPs)
chr6 (9-122)||(17551339-17551453)
chr6 (62-122)||(2242036-2242096)
[»] chr3 (2 HSPs)
chr3 (7-119)||(9311040-9311153)
chr3 (42-94)||(42672829-42672881)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 25248654 - 25248771
Alignment:
Q  266 gtttttagaactcaaacccaagtcctcattcttacgtttccatcaacgttccttataataatataatccttttctttttggtaatcataaaatccttctt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25248654 gtttttagaactcaaacccaagtcctcattcttacgtttccatcaacgttccttataataataaaatccttttctttttggtaatcataaaatccttctt 25248753  T
Q  366 atattttcattatctgtg 383  Q
    ||||||||||||||||||    
T  25248754 atattttcattatctgtg 25248771  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 32803765 - 32803684
Alignment:
Q  42 gtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaata-tgataatttaaatatcatttctcttt 122  Q
    ||||||||| ||||| ||| ||||| | |||  ||||||||||| |||||||| | |||| |||||||||||||||||||||    
T  32803765 gtaaaaacataatataaatatgagaaagaaaattgttacaaaaactatcaaaaaaatgattatttaaatatcatttctcttt 32803684  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 21392685 - 21392567
Alignment:
Q  3 atatgtattgacac-aaaaccaaaacaatcagaagaaaaggtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaatatgata 101  Q
    ||||||||||| || |||||||||||||| ||| || || ||||||||| ||||| ||| ||| ||| |||||||| ||||||||||| | || |||||     
T  21392685 atatgtattgataccaaaaccaaaacaat-aga-gataaagtaaaaacataatataaatatgaaagagaaagctgtcacaaaaattattacaaaatgatt 21392588  T
Q  102 atttaaatatcatttctcttt 122  Q
     || |||||||||||||||||    
T  21392587 gttcaaatatcatttctcttt 21392567  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 20381428 - 20381349
Alignment:
Q  42 gtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctctt 121  Q
    ||||||||||||| |||   ||||||| |||| ||||| |||||||||||||| |||||  || |||||| |||||||||    
T  20381428 gtaaaaacacaatgtgagcatgagagagaaagttgttataaaaattatcaaaaaatgattgttcaaatataatttctctt 20381349  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 27051046 - 27051160
Alignment:
Q  8 tattgacacaaaa-ccaaaacaatcagaagaaaaggtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaatatgataattta 106  Q
    ||||||||||||| |||||||||| |  ||| |||||||||| | ||| ||| | ||||||| |||| | | ||||||||||| |||| ||| |  ||||    
T  27051046 tattgacacaaaaaccaaaacaataaagagagaaggtaaaaagataatgtgagtatgagagagaaagttatcacaaaaattat-aaaaaatggttgttta 27051144  T
Q  107 aatatcatttctcttt 122  Q
    ||||||||||||||||    
T  27051145 aatatcatttctcttt 27051160  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 39158162 - 39158103
Alignment:
Q  62 tgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctctt 121  Q
    ||||||| |||| ||| |||||||||||||||| |||||  || ||||||||||||||||    
T  39158162 tgagagagaaagttgtcacaaaaattatcaaaaaatgattgttcaaatatcatttctctt 39158103  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 52263874 - 52263950
Alignment:
Q  43 taaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctc 119  Q
    |||||| | ||||||| | ||||||| |||| ||||| |||||||||||||| |||||  | |||||||||| ||||    
T  52263874 taaaaatataatatgagtatgagagagaaagttgttataaaaattatcaaaaaatgattgtataaatatcatgtctc 52263950  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 10902781 - 10902705
Alignment:
Q  42 gtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctc 119  Q
    ||||||||| ||| ||| | ||||||| |||| |||||||||||||||||||| ||| | ||| ||||||||||||||    
T  10902781 gtaaaaacataatgtgagtgtgagagagaaagttgttacaaaaattatcaaaa-atggttattcaaatatcatttctc 10902705  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 15716990 - 15717048
Alignment:
Q  62 tgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctct 120  Q
    |||||||||||| ||| |||||| |||||||||  |||| ||| |||||||||||||||    
T  15716990 tgagagaaaaagttgtcacaaaagttatcaaaaagtgattattcaaatatcatttctct 15717048  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 37133857 - 37133909
Alignment:
Q  42 gtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaa 94  Q
    ||||||||| ||||||| | |||||||||||| ||| |||||| |||||||||    
T  37133857 gtaaaaacataatatgagtgtgagagaaaaagttgtcacaaaagttatcaaaa 37133909  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 19982000 - 19982060
Alignment:
Q  62 tgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctcttt 122  Q
    |||||||||||  ||| |||||||||||||||| |||||  || |||||||||||||||||    
T  19982000 tgagagaaaaaattgtcacaaaaattatcaaaaaatgattgttaaaatatcatttctcttt 19982060  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 31683454 - 31683521
Alignment:
Q  7 gtattgacacaaaa-ccaaaacaatcagaagaaaaggtaaaaacacaatatgaatttgagagaaaaag 73  Q
    |||||||||||||| |||||||||| | |||| || ||||||||| ||||||||| ||||||| ||||    
T  31683454 gtattgacacaaaaaccaaaacaataaaaagagaaagtaaaaacataatatgaatatgagagagaaag 31683521  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 1416053 - 1416113
Alignment:
Q  62 tgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctcttt 122  Q
    |||||||||||  ||| ||||||||||||| || ||||  |||||||||||||||||||||    
T  1416053 tgagagaaaaaattgtcacaaaaattatcataaaatgaatatttaaatatcatttctcttt 1416113  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 17551339 - 17551453
Alignment:
Q  9 attgacacaaaa-ccaaaacaatcaga-agaaaaggtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaatatgataattta 106  Q
    |||||||||||| |||||||||| ||| ||| || ||||||||| ||| ||| | ||||||| |||| |||||||||| || |||||| ||| |  || |    
T  17551339 attgacacaaaaaccaaaacaat-agagagataaagtaaaaacataatgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttca 17551437  T
Q  107 aatatcatttctcttt 122  Q
    ||||||||||||||||    
T  17551438 aatatcatttctcttt 17551453  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 2242036 - 2242096
Alignment:
Q  62 tgagagaaaaagctgttacaaaaattatcaaaatatgataatttaaatatcatttctcttt 122  Q
    ||||||| |||| ||| ||||||||| |||||| |||||  || |||||||||||||||||    
T  2242036 tgagagagaaagttgtcacaaaaattgtcaaaaaatgattgttcaaatatcatttctcttt 2242096  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 9311153 - 9311040
Alignment:
Q  7 gtattgacac-aaaaccaaaacaatcagaagaaaaggtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaatatgataattt 105  Q
    |||||||||| ||||||||||||||  | ||| || ||||||||| ||||||| | | ||||| |||| ||| ||||| ||||||| || |||||  |      
T  9311153 gtattgacacgaaaaccaaaacaatagggagagaaagtaaaaacataatatgagtgtaagagagaaagttgtcacaaatattatcagaaaatgattgtac 9311054  T
Q  106 aaatatcatttctc 119  Q
    ||||||||||||||    
T  9311053 aaatatcatttctc 9311040  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 42672829 - 42672881
Alignment:
Q  42 gtaaaaacacaatatgaatttgagagaaaaagctgttacaaaaattatcaaaa 94  Q
    ||||||||| ||| ||||| |||||||||||  ||| ||||||||||||||||    
T  42672829 gtaaaaacataatgtgaatatgagagaaaaatttgtcacaaaaattatcaaaa 42672881  T

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