View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_25 (Length: 398)
Name: NF4032_high_25
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_25 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Complemental strand, 46960024 - 46959641
Alignment:
| Q |
17 |
caaaggcatgggagaagattgaaaatgtaaatgtatat--ggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttgg |
114 |
Q |
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| T |
46960024 |
caaaggcatgggagaagattgaaaatgtaaatgtatatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttgg |
46959925 |
T |
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| Q |
115 |
taaccttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctcca |
214 |
Q |
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| T |
46959924 |
taaccttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctcca |
46959825 |
T |
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| Q |
215 |
atatcacatttcaggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtatt |
314 |
Q |
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| T |
46959824 |
atatcacatttcaggatatcgtgatggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgacttccatgcaagaatcaggtatt |
46959725 |
T |
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| Q |
315 |
gaattttaagatattgttgcagggtcgttttgtaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttat |
398 |
Q |
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| T |
46959724 |
gaattttaagatatttttgcagggtcattttgcaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttat |
46959641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 339
Target Start/End: Original strand, 44522137 - 44522455
Alignment:
| Q |
24 |
atgggagaagattgaaaatgtaaatgtatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttg----gtaacc |
119 |
Q |
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| T |
44522137 |
atgggagaagattcaaaatgtaattgttgatggagcttatctttacaacactgataatggggtgagaatcaaaacatggcaggtaactttcttcgtaacc |
44522236 |
T |
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| Q |
120 |
ttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatc |
219 |
Q |
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| T |
44522237 |
gtatcattttcattctcattctatttcacctagtgatga-caagtctattgagtcgagccaaattttctttagggtgggagtggttttgcctccaagatc |
44522335 |
T |
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| Q |
220 |
acatttcaggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgaattccatgcaagaatcaggtattgaatt |
319 |
Q |
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| T |
44522336 |
acattccagaatatcttaatggaaaatgtgtccaatccaataataatagatcaatactactgcgattcacgacatccatgcaagaatcaggtattgaatt |
44522435 |
T |
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| Q |
320 |
ttaagatattgttgcagggt |
339 |
Q |
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| T |
44522436 |
ttaagatatttttgcagggt |
44522455 |
T |
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