View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_27 (Length: 374)
Name: NF4032_high_27
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 32505103 - 32505471
Alignment:
| Q |
1 |
aactagcttatcatacagctcatctcattaaattgctattacccttccctttatcatgcatgattcctcaatggttaaaaaatttcatagctgaattact |
100 |
Q |
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| T |
32505103 |
aactagcttatcatacagctcatctcattaaattgctattacccttctctttatcatgcatgattcctcaatggttaaaaaatttcaaagctgaattact |
32505202 |
T |
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| Q |
101 |
ttaattgtgctaagatcaagaacaatgtgaatggtttgacaattgggtggggcagatgacatttgaagggtggtacgtatgagttctgcttacgactcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32505203 |
ttaattgtgctaagatcaagaacaatgtgaatggtttgacaattgggtggggcagatgacatttgaagggtggtacgtatgagttctgcttaggactcga |
32505302 |
T |
|
| Q |
201 |
caagacattgattttgtttctctctgtacatttacgtgtactgctaaccttcactgcccaattgccaacaaagtttttcattcatggggtcatgggacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32505303 |
caagacattgattttgtttctctctgtacatttacgtgtactgctaaccttcactgcccaattgccaacaaagtttttcattcatggggtcatgggacca |
32505402 |
T |
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| Q |
301 |
tga----catgttttcatttattagtgttcatccgaacataattaaacaacaaattccccttacctatg |
365 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32505403 |
tgacatgcatgttttcatttattagtgttcatcccaacataattaaacaacaaattccccttacctatg |
32505471 |
T |
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