View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_35 (Length: 286)
Name: NF4032_high_35
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 9168532 - 9168262
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9168532 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
9168433 |
T |
|
| Q |
116 |
aatagaagaaggtgattgcaccattcctcgctatttcttaaccgcaaccaatttcacaagttattacagtcattacgagtacaagggggatccatacgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9168432 |
aatagaagaaggtgattgcaccattcctcgctatttcttaaccgcaaccaatttcacaagttattacagtcattacgagtacaagggggatccatacgca |
9168333 |
T |
|
| Q |
216 |
ttccatgattattctaggccggagcatgtaatatacttgaactgtaataagcaactgaagaacgatcctat |
286 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
9168332 |
ttccatgattattctaggccggagcatgtagtatacttgaactgtagcaagcaactgaagaacgatcctat |
9168262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 9306862 - 9307031
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
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|||| |||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||| |
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| T |
9306862 |
cctgcgaaaacaacatcacaacgttaactttgttttcaggtaaatactatgtgaaatcaatcaactacagaaactactcaatgagagtagttgatcttgg |
9306961 |
T |
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| Q |
116 |
aatagaagaaggtgattg---caccattcctcgctatttcttaaccgcaaccaatttcacaagttattac |
182 |
Q |
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||| ||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
9306962 |
aattcaagaaggtgattgctcctccatgcctcgctatttcttaaccgcagccaatttcacaagttcttac |
9307031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 9475326 - 9475491
Alignment:
| Q |
23 |
aaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctggaatagaa |
122 |
Q |
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|||||||||||||||| ||| | || ||| |||||| ||| ||||||| |||||||||||| | ||||||||||||||| |||||||||||||||| || |
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| T |
9475326 |
aaacaacatcacaacgttaactttgctttcgggtaactacaatgtgaagtcaatcaactacgataactacacaatcagactagttgatcctggaattcaa |
9475425 |
T |
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| Q |
123 |
gaaggtgattg---caccattcctcgctatttcttaaccgcaaccaatttcacaagttattacagt |
185 |
Q |
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| T |
9475426 |
gaggatgattgcttctccattcctcgttatttcttaaccaaatccaatttcacaagttattacagt |
9475491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 8936505 - 8936363
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
| |
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|||| |||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| || |
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| T |
8936505 |
cctgcgaaaacaacatcacaatgttaactctgttgtcgggtaaatactatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccgg |
8936406 |
T |
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| Q |
116 |
aatagaagaaggtgattg---caccattcctcgctatttctta |
155 |
Q |
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||| ||||| |||||||| ||||||||||| ||||| |||| |
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| T |
8936405 |
aattgaagagggtgattgctccaccattcctcactattactta |
8936363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 8924864 - 8924746
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
| |
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|||| ||||||||||| ||||| ||| ||| || | | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || |
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| T |
8924864 |
cctgcgaaaacaacataacaactttaactctattgtcgagtaaatactatgtgaaatcaatcaactacaataactacacaatcagaatagttgatcccgg |
8924765 |
T |
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| Q |
116 |
aatagaagaaggtgattgc |
134 |
Q |
| |
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||| ||||| ||||||||| |
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| T |
8924764 |
aattgaagagggtgattgc |
8924746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 8960026 - 8959889
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
| |
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|||| ||||||||||||||||| ||| | |||| | ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| || |
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| T |
8960026 |
cctgcgaaaacaacatcacaaccttaactttgttgtcgggtaaatactatgtgaaatcaatcaactacaataactacacaattcggttagttgatcccgg |
8959927 |
T |
|
| Q |
116 |
aatagaagaaggtgattg---caccattcctcgctatt |
150 |
Q |
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||| ||||| |||||||| ||||||||||| ||||| |
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| T |
8959926 |
aattgaagagggtgattgctccaccattcctcactatt |
8959889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 8945999 - 8945881
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
| |
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|||| ||||| |||||||||| | ||| ||| ||| ||||||||| |||| ||||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
8945999 |
cctgcgaaaaaaacatcacaatgttaaagctgctttctggtaaataccatgtaaaatcaatcaactacaataactacacaattcggttagttgatcctgg |
8945900 |
T |
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| Q |
116 |
aatagaagaaggtgattgc |
134 |
Q |
| |
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|||| |||||||||||||| |
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| T |
8945899 |
aataaaagaaggtgattgc |
8945881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 9335640 - 9335524
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
| |
|
|||| ||||||||||||||| || ||| |||||||| ||||||||||||||| | ||||||||||| |||||||||||| | |||||||||| || |
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| T |
9335640 |
cctgcgaaaacaacatcacagcgttaactctgttttcaggtaaatactatgtgcaggaaatcaactacataaactacacaattcggttagttgatccagg |
9335541 |
T |
|
| Q |
116 |
aatagaagaaggtgatt |
132 |
Q |
| |
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||| ||||||||||||| |
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| T |
9335540 |
aattgaagaaggtgatt |
9335524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 9245082 - 9245163
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaat |
97 |
Q |
| |
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|||| ||||||||||||||| | ||| |||||||| |||||| ||||||||||| ||||||||||||| ||||||||||| |
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| T |
9245082 |
cctgcgaaaacaacatcacagtgttaactctgttttcgggtaagtactatgtgaaggcaatcaactacaacaactacacaat |
9245163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 15912810 - 15912979
Alignment:
| Q |
16 |
cctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaactacaaaaactacacaatcagagtagttgatcctgg |
115 |
Q |
| |
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|||| ||||||||||||||||| ||| |||||||| ||||| ||||||||| ||||||||| |||||||||||||| || |||||||| | || |
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| T |
15912810 |
cctgcgaaaacaacatcacaaccttaaatctgttttcaggtaagtactatgtgttggaaatcaactataaaaactacacaattaggttagttgatgccgg |
15912909 |
T |
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| Q |
116 |
aatagaagaaggtgattg---caccattcctcgctatttcttaaccgcaaccaatttcacaagttattac |
182 |
Q |
| |
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| |||| |||||||| | |||||||||| || ||||||||| || |||| ||| |||||| |||| |
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| T |
15912910 |
gttgcaagagggtgattgctcctccattcctcgttacttcttaaccacatccaacttctcaagtttttac |
15912979 |
T |
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