View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_38 (Length: 279)
Name: NF4032_high_38
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 774722 - 774498
Alignment:
| Q |
2 |
tatgaaaatccaagaccaacatcaggaattcatcgtgtgatatttgtgttgtttaggcaaccttgtaggcacacagtatttgctcctggatggagacaaa |
101 |
Q |
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| T |
774722 |
tatgaaaatccaagaccaacatcagggattcatcgtgtgatatttgtgttgtttaggcaaccttgtaggcacacagtattagctcctggatggagacaaa |
774623 |
T |
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| Q |
102 |
atttcattacaagagattttgctgaattttataatcttggattacctgttgctgctctctatttcaattgtcaacgagaaaatggttctggtggaaggag |
201 |
Q |
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| T |
774622 |
atttcattacaagagattttgctgaattttacaatcttggattacctgttgctgctctctatttcaattgtcaacgagaaaatggttctggtggaaggag |
774523 |
T |
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| Q |
202 |
gttgatcatctaataataataataa |
226 |
Q |
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| T |
774522 |
gttgatcatctaataataataataa |
774498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 814656 - 814419
Alignment:
| Q |
1 |
ttatgaaaatccaagaccaacatcaggaattcatcgtgtgatatttgtgttgtttaggcaaccttgtaggcacacagtatttgctcctggatggagacaa |
100 |
Q |
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|||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
814656 |
ttatgaaagtccaagaccagcatcagggattcatcgtgtgatatttgtgttgtttaggcaaccttgtaggcacacagtattagctcctggatggagacaa |
814557 |
T |
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| Q |
101 |
aatttcattacaagagattttgctgaattttataatcttggattacctgttgctgctctctatttcaattgtcaacgagaaaatggttctggtggaagga |
200 |
Q |
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| T |
814556 |
aatttcattacaagagattttgctgaattttacaatcttggattacctgttgctgctctctatttcaattgtcaacgagaaaatggttctggtggaagga |
814457 |
T |
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| Q |
201 |
ggttgatcatctaataataataataaacatttgttcac |
238 |
Q |
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| T |
814456 |
ggatggtcatttaacaaatagtataaacatttgttcac |
814419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 32845162 - 32845254
Alignment:
| Q |
82 |
tgctcctggatggagacaaaatttcattacaagagattttgctgaattttataatcttggattacctgttgctgctctctatttcaattgtca |
174 |
Q |
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|||||| |||||| |||||||||||| |||||||| ||||||||| | || |||||||||| ||||||||||||| ||| ||||||||||| |
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| T |
32845162 |
tgctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctgctgtcttcttcaattgtca |
32845254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 32865664 - 32865780
Alignment:
| Q |
82 |
tgctcctggatggagacaaaatttcattacaagagattttgctgaattttataatcttggattacctgttgctgctctctatttcaattgtcaacgagaa |
181 |
Q |
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|||||| |||||| |||||||||||| ||||||||| || ||||||||| |||||||||| || ||||||||| ||| |||||||||||| | ||| |
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| T |
32865664 |
tgctccgggatggcgacaaaatttcaatacaagagaattcattgaattttacaatcttggatcgccggttgctgctgtcttcttcaattgtcaaagggaa |
32865763 |
T |
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| Q |
182 |
aatggttctggtggaag |
198 |
Q |
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| T |
32865764 |
actggttctgggggaag |
32865780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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