View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_48 (Length: 229)
Name: NF4032_high_48
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 40276518 - 40276714
Alignment:
| Q |
18 |
aatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagt |
117 |
Q |
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| T |
40276518 |
aatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagt |
40276617 |
T |
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| Q |
118 |
tttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
214 |
Q |
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| T |
40276618 |
tttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctg |
40276714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 39625238 - 39625429
Alignment:
| Q |
18 |
aatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagt |
117 |
Q |
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| T |
39625238 |
aatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagc |
39625337 |
T |
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| Q |
118 |
tttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgt |
209 |
Q |
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| T |
39625338 |
tttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgt |
39625429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 39634788 - 39634979
Alignment:
| Q |
18 |
aatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagt |
117 |
Q |
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|||||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | ||| || |
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| T |
39634788 |
aatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagc |
39634887 |
T |
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| Q |
118 |
tttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgt |
209 |
Q |
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|||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||||||||||||| ||||| || || |||||||||||||| |
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| T |
39634888 |
tttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgt |
39634979 |
T |
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