View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_high_5 (Length: 623)
Name: NF4032_high_5
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 4 - 424
Target Start/End: Complemental strand, 3632614 - 3632194
Alignment:
| Q |
4 |
ggagcagcacagagagatgaactatcacttccagataagaataaatggcaactcctgtaaccaccttcttcccttgataatacatcgacgtctttgacat |
103 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3632614 |
ggagcaacactgagagatgaactatcacttccagataagaataaatggcaactcctgtatccaccttcttcccttgataatacatcgacgtctttgacat |
3632515 |
T |
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| Q |
104 |
caataccatattttggagaaggtgccaaatccttgttcgtttcaaagaagagaaggtgtcagcaaaaaatgtaactaatataacaatcacaagggactat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3632514 |
caataccatattttggagaaggtgccaaatccttgttcgtttcaaagaagagaaggtgtcagcaaaaaatgtaactaatataacaatcacaagggactat |
3632415 |
T |
|
| Q |
204 |
cagaattgaatgataaactaaaatgtaacgggtgaaaatcaaattgaattaaatacaaacagagaatgattttcaatatgaagcaaaaataagtagtact |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3632414 |
cagaattgaatgataaactaaaatgtaacgggtgaaaatcaaattgaattaaatacaaacagagaatgattttcaatatgaagcaaaaataagtagtact |
3632315 |
T |
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| Q |
304 |
gtaccatttgcgaaccattagcattattgtactatatccatgtaaaaacagattacattgactaaagactaaatagaatttaaaaatgtgagactaatca |
403 |
Q |
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| T |
3632314 |
gtaccatttgcaaaccattagcattattgtactatatccatgtaaaaacagattacattgactaaagactaaatagaatttaaaaatgtgagactaatca |
3632215 |
T |
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| Q |
404 |
tattaccactcatacaataac |
424 |
Q |
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| T |
3632214 |
tattaccactcatacaataac |
3632194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 482 - 602
Target Start/End: Complemental strand, 3632136 - 3632016
Alignment:
| Q |
482 |
aggacagtagctttagaatcaaacaaaactcggaaacaaaccaaaggttcatccttcattgggcaaccctgtctcacttccttcttcaacatagttatag |
581 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3632136 |
aggacagtagctttagaatcaaacaaaactcgaaaacaaaccaaaggttcatccttcattgggcaaccctgtctcacttccttcttcaacatagttatag |
3632037 |
T |
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| Q |
582 |
aaataaaaatactataacaaa |
602 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3632036 |
aaataaaaatactataacaaa |
3632016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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