View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4032_high_54 (Length: 217)

Name: NF4032_high_54
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4032_high_54
NF4032_high_54
[»] chr3 (3 HSPs)
chr3 (140-199)||(42517223-42517282)
chr3 (140-200)||(1238646-1238706)
chr3 (1-61)||(42517386-42517446)
[»] chr5 (1 HSPs)
chr5 (140-200)||(41971152-41971212)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 42517282 - 42517223
Alignment:
Q  140 agctctatttaattagagcaccttttgatattttccgtagtttctcatatggacttattg 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42517282 agctctatttaattagagcaccttttgatatttttcgtagtttctcatatggacttattg 42517223  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 1238706 - 1238646
Alignment:
Q  140 agctctatttaattagagcaccttttgatattttccgtagtttctcatatggacttattga 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  1238706 agctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattga 1238646  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42517446 - 42517386
Alignment:
Q  1 ttattggaagaagtttgtcaaaccgacagacgaccataacagtggcagtggacaagcctag 61  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  42517446 ttattggaagaagtttgtgaaaccgacagacgaccataacagtggcggtggacaagcctag 42517386  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 41971212 - 41971152
Alignment:
Q  140 agctctatttaattagagcaccttttgatattttccgtagtttctcatatggacttattga 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  41971212 agctctatttaattagagcaccttttgatatttttcgtagtttctcatatagacttattga 41971152  T

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