View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4032_high_6 (Length: 618)
Name: NF4032_high_6
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 13 - 554
Target Start/End: Complemental strand, 14021649 - 14021108
Alignment:
| Q |
13 |
cagagtacgagggaagagcttgaagatgtttcgaatccaagtggtggaggaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14021649 |
cagagtacgagggaagagcttgaagatgtttcgaatccaagtggtggaggaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacaga |
14021550 |
T |
|
| Q |
113 |
aggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattctgtaatgaaagtggtgttaagcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14021549 |
aggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattctgtaatgaaagtggtgttaagcg |
14021450 |
T |
|
| Q |
213 |
tcatgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagccctagatatgaaaacaaaaacccaaataacaaaatttgaatattttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14021449 |
tcatgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagccctagatatgaaaacaaaaacccaaataacaaaatttgaatattttc |
14021350 |
T |
|
| Q |
313 |
tttcctagggtttattgaatattccatgtcatttgaagataagataagggtgcaagtggaatggaacattataaatatttatgctacttaatttgtctta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14021349 |
tttcctagggtttattgaatattccatgtcatttgaagataagataagggtgcaagtggaatggaacattataaatatttatgctacttaatttgtctta |
14021250 |
T |
|
| Q |
413 |
gtgtttaaacgtttaggtaagattctagtactttaatttgattagatgatcttattattgttgatgaactaatttgagtttaattttatctagacttttg |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14021249 |
gtgtttaaacgtttaggtaagattctagtactttaatttgattagatgatcttattattgttgatgaactaatttgagtttaattttatctagacctttg |
14021150 |
T |
|
| Q |
513 |
gtcatgatttagttttctttgtacaatgtacatgttctagtg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14021149 |
gtcatgatttagttttctttgtacaatgtacatgctctagtg |
14021108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 567 - 601
Target Start/End: Complemental strand, 14021072 - 14021038
Alignment:
| Q |
567 |
tttctttaatttgcagtattgtttgtgttgtggtg |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14021072 |
tttctttaatttgcagtattgtttgtgttgtggtg |
14021038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 27508683 - 27508737
Alignment:
| Q |
215 |
atgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagcccta |
269 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| |||||||||||||||| ||||| |
|
|
| T |
27508683 |
atgttcttaaagtttggatgcacaataacaagaacactcttggtaagaaacccta |
27508737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 46300827 - 46300649
Alignment:
| Q |
91 |
acaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattct |
190 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | | || || |||||| | || |||||||||||||| | ||||||||| || || |||||| |
|
|
| T |
46300827 |
acaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggtgcaattgaacaattct |
46300728 |
T |
|
| Q |
191 |
gtaatgaaagtggtgttaagcgtcatgttcttaaggtttggatgcataacaacaaacacactcttggtaagaagcccta |
269 |
Q |
| |
|
|| ||| | | | | ||| | ||||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
46300727 |
gtgctgagaattttatcaagagacatgtgcttaaggtttggatgcacaataacaagcacactcttggtaagaaacccta |
46300649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 245
Target Start/End: Complemental strand, 2494415 - 2494258
Alignment:
| Q |
88 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaat |
187 |
Q |
| |
|
|||||||| || || || || ||||||||||||||| || | || ||||||||| | || |||| || |||||| | ||||| | || ||||| || | |
|
|
| T |
2494415 |
aggacaaagtttacacaagatcagaaggataagatgctgaaatttgctgagaaagttgggtggaagatgcagaaaaaagatgatgaatttgttcatgagt |
2494316 |
T |
|
| Q |
188 |
tctgtaatgaaagtggtgttaagcgtcatgttcttaaggtttggatgcataacaacaa |
245 |
Q |
| |
|
| |||||||||| ||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
2494315 |
tttgtaatgaaattggtgttgatcgtagtgttcttaaggtttggatgcataacaacaa |
2494258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 56378749 - 56378802
Alignment:
| Q |
88 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
141 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||| | || ||||||||| |
|
|
| T |
56378749 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
56378802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 3683678 - 3683646
Alignment:
| Q |
91 |
acaaaattcacgcaggaacagaaggataagatg |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
3683678 |
acaaaattcacgcaggaacagaaggaaaagatg |
3683646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University