View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_10 (Length: 535)
Name: NF4032_low_10
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_10 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 7048652 - 7048269
Alignment:
| Q |
1 |
taagttatttacaatgaaaaaatggttgctaaaagatgcaccttttttctcaaaactcatggagcgtctttcttttcgtataaatagaaaaaacagaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7048652 |
taagttatttacaatgaaaaaatggttgctaaaagatgcaccttttttctcaaaactcatggagcgtctttcttttcgtataaatagaaaaaacagaagt |
7048553 |
T |
|
| Q |
101 |
gaacaccaaaatgattatcgtcaatagggtacatataattgctgggattttaccccaattattgaatgtcattgtg-------accacactattttagct |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7048552 |
gaacaccaaaatgattatcgtcaatagggtacatataattgctgggattttaccccaattattgaatgtcattgtgaccaatcaccacactattttagct |
7048453 |
T |
|
| Q |
194 |
tcctattgttgtatgacagcacataactcgttttttccatagcagtattttcaggattaaactcactcaggaagttgttccatagatgtaaatttaacaa |
293 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
7048452 |
tcctattcttgtatgacagcacataactggttttttccatagcagtattttcagggttaaactcactgaggaagttgttacatagatgtaaagttaacaa |
7048353 |
T |
|
| Q |
294 |
gacgattgtatgaaaccacatacaacaaaaacaacaaccaatttctaagtcttcatctacctctagtgatttgactcatttcca |
377 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7048352 |
gaagattgtatgaaaccacatacaacaaaaacaagaaccaatttctaggtcttcatctacctctagtgatttgactcatttcca |
7048269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 165 - 377
Target Start/End: Complemental strand, 7033955 - 7033735
Alignment:
| Q |
165 |
aatgtcattgtgaccacactattttag--------cttcctattgttgtatgacagcacataactcgttttttccatagcagtattttcaggattaaact |
256 |
Q |
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|||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
7033955 |
aatgtcattgtgaccacactattttaagtcgttttcttccaattcttgtatgaaagcacataactggttttttccatagcagtattttcagggttaaact |
7033856 |
T |
|
| Q |
257 |
cactcaggaagttgttccatagatgtaaatttaacaagacgattgtatgaaaccacatacaacaaaaacaacaaccaatttctaagtcttcatctacctc |
356 |
Q |
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|||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
7033855 |
cactgaggaagttgttacatagatgtaaagttaacaagaagattgtatgaaaccacatacaacaaaaacaagaaccaatttctaggtcttcatctacctc |
7033756 |
T |
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| Q |
357 |
tagtgatttgactcatttcca |
377 |
Q |
| |
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||||||||||||||||||||| |
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| T |
7033755 |
tagtgatttgactcatttcca |
7033735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 370
Target Start/End: Original strand, 23714398 - 23714433
Alignment:
| Q |
335 |
tttctaagtcttcatctacctctagtgatttgactc |
370 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
23714398 |
tttctaagtcttcatctacgtctagtgatttgactc |
23714433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 370
Target Start/End: Original strand, 24102070 - 24102105
Alignment:
| Q |
335 |
tttctaagtcttcatctacctctagtgatttgactc |
370 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
24102070 |
tttctaagtcttcatctacgtctagtgatttgactc |
24102105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 518
Target Start/End: Complemental strand, 7033743 - 7033713
Alignment:
| Q |
488 |
tcatttccaatcataatcttaccacacatca |
518 |
Q |
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| T |
7033743 |
tcatttccaatcataatcttaccacacatca |
7033713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 518
Target Start/End: Complemental strand, 7048277 - 7048247
Alignment:
| Q |
488 |
tcatttccaatcataatcttaccacacatca |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
7048277 |
tcatttccaatcataatcttaccacacatca |
7048247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 22640370 - 22640589
Alignment:
| Q |
4 |
gttatttacaatgaaaaaatggttgctaaaagatgcaccttttttctcaaaactcatggagcgtctttcttttcgtataaatagaaaaaacagaagtgaa |
103 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||| ||| |||||||| | |||||||||||||||| ||||||| |
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| T |
22640370 |
gttattttcaatgaaaaaatggttgctaaaagatgcacccttttt-tcataactcaa----cgtttttctttttgcataaatagaaaaaacaaaagtgaa |
22640464 |
T |
|
| Q |
104 |
caccaaaatgattatcgtcaatagggtacatataattgctgggattttaccccaattattgaatgtcattgtgaccacactatttta-gcttcctattgt |
202 |
Q |
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||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| | ||||||||| |
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| T |
22640465 |
caccacaatgattatcatcgatagggtacatataattgctgggattttaccccaattattgaatgtaattgtcatcacactatttaactcttcctattcc |
22640564 |
T |
|
| Q |
203 |
tgtatgacagcacataactcgtttt |
227 |
Q |
| |
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||||||| |||||||||||| |||| |
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| T |
22640565 |
tgtatgatagcacataactcatttt |
22640589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 27691 - 27472
Alignment:
| Q |
4 |
gttatttacaatgaaaaaatggttgctaaaagatgcaccttttttctcaaaactcatggagcgtctttcttttcgtataaatagaaaaaacagaagtgaa |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||| ||| ||| |||| | |||||||||||||||| ||||||| |
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| T |
27691 |
gttattttcaatgaaaaaatggttgctaaaagatgcaccctttt-ctcataactcaa----cgtttttgtttttgcataaatagaaaaaacaaaagtgaa |
27597 |
T |
|
| Q |
104 |
caccaaaatgattatcgtcaatagggtacatataattgctgggattttaccccaattattgaatgtcattgtgaccacactatttta-gcttcctattgt |
202 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||| |
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| T |
27596 |
caccacaatgattatcatcgatagggtacatataattgctgggattttaccccaattattgaatgtaattgtcaccacactatttaactcttcctattcc |
27497 |
T |
|
| Q |
203 |
tgtatgacagcacataactcgtttt |
227 |
Q |
| |
|
| ||||| |||||||||||| |||| |
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|
| T |
27496 |
tttatgatagcacataactcatttt |
27472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 27249304 - 27249246
Alignment:
| Q |
387 |
ctacagaatgtacatgtattctacctacaagctcaaaccacctaagcctaatttccact |
445 |
Q |
| |
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||||| ||| |||| || |||| |||||||||||||||||||||||||||||||||||| |
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| T |
27249304 |
ctacaaaatctacaggtcttctccctacaagctcaaaccacctaagcctaatttccact |
27249246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 11389869 - 11389824
Alignment:
| Q |
335 |
tttctaagtcttcatctacctctagtgatttgactcatttccatct |
380 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
11389869 |
tttctacgtcttcctctacctctagtgatttgactactttccatct |
11389824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 444
Target Start/End: Original strand, 42026758 - 42026791
Alignment:
| Q |
411 |
ctacaagctcaaaccacctaagcctaatttccac |
444 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
42026758 |
ctacaagctcaaaccacctaagcctagtttccac |
42026791 |
T |
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