View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4032_low_12 (Length: 518)
Name: NF4032_low_12
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 3592431 - 3592917
Alignment:
| Q |
19 |
gatatgtcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaaccttnnnnnnnn- |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592431 |
gatatgtcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttccttgggatgattctgatatcaaaccttaaaaaaaaa |
3592530 |
T |
|
| Q |
118 |
cgaaccggacagttcaaccgacttttattgtggtttggttattttggcagttcgatcacgggcggttcaagacggttgaatcatgatctagaagtctcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3592531 |
cgaaccggacagttcaaccgacttttattgtggtttggttattttggcagttcgatcacgggcggttcaacacggttgaatcatgatctagaagtctcac |
3592630 |
T |
|
| Q |
218 |
ctgttcgatgtccagttcaggttttaaaccattgctttgatataaaaatatnnnnnnnntgatttgttaacacatggtagtttagtgtctaatgtccata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3592631 |
ctgttcgatgtccagttcaggttttaaaccattgctttgatataaaaaaa----aaaaatgatttgttaacacatggtagtttagtttctaatgtccata |
3592726 |
T |
|
| Q |
318 |
ggttagttatttacttggggtgttgtgtttttgatacagattagtaagtgttcttgttctcatatggaacatattatgcagtggtgtatgagtatttgga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592727 |
ggttagttatttacttggggtgttgtgtttttgatacagattagtaagtgttcttgttctcatatggaacatattatgcagtggtgtatgagtatttgga |
3592826 |
T |
|
| Q |
418 |
gctgacttattttagtttcagcttcagattcaagcaagagggtctaattaatattaatgtaatccactgtgtttacctacctattcctatg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3592827 |
gctgacttattttagtttcagcttcagattcaagcaagagggtctaattaatattaatgtaatccactgtgtttacctacttattcctatg |
3592917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 35722359 - 35722446
Alignment:
| Q |
25 |
tcaaactattggagttgggaggatattgattctttggtctcaactgatctaaatgttcc---ttgggatgattctgatatcaaacctt |
109 |
Q |
| |
|
||||| ||||||| |||||| || |||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
35722359 |
tcaaagtattggaattgggaagacattgattcattggtttcaactgatctaaagaatccttattgggatgattctgatatcaaacctt |
35722446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University