View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_16 (Length: 446)
Name: NF4032_low_16
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 26056301 - 26056606
Alignment:
| Q |
20 |
agattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttg |
119 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
26056301 |
agattgagggctgttcttcatcaagggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttg |
26056400 |
T |
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| Q |
120 |
tttagttctggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactt |
219 |
Q |
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||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
26056401 |
ttttgttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggttgtcagtttgagcacagatattcagtacttcgactt |
26056500 |
T |
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| Q |
220 |
tgatactgaatttgattgaactactagcctctcaaac--attcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgatt |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26056501 |
tgaaactgaatttgattgaactactagcctctcaaacatattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgatt |
26056600 |
T |
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| Q |
318 |
ttggag |
323 |
Q |
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|||||| |
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| T |
26056601 |
ttggag |
26056606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 26085538 - 26085817
Alignment:
| Q |
20 |
agattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26085538 |
agattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggtagttttg |
26085637 |
T |
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| Q |
120 |
tttagttctggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactt |
219 |
Q |
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||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||| |
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| T |
26085638 |
ttttgttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcgcagatattcagtacttcgactt |
26085737 |
T |
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| Q |
220 |
tgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085738 |
tgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatag |
26085817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 26111875 - 26112173
Alignment:
| Q |
20 |
agattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
26111875 |
agattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttg |
26111974 |
T |
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| Q |
120 |
tttagttctggttatatagggttgtgaag--ttttggagggt---taattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttg |
214 |
Q |
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||| ||||||||||||||||||| ||||| | | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26111975 |
ttttgttctggttatatagggttctgaagcttataggagggttaataattaagaaatgaagaattgggtggtcagtttgagcacagatattc-------- |
26112066 |
T |
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| Q |
215 |
gactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtg |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
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| T |
26112067 |
-actttgaaactgaatttgattgaactactagcctctcaaatattcttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtg |
26112165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 26067963 - 26068150
Alignment:
| Q |
20 |
agattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
26067963 |
agattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttg |
26068062 |
T |
|
| Q |
120 |
tttagttctggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattca |
207 |
Q |
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||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |
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| T |
26068063 |
ttttgttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca |
26068150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 26128835 - 26129085
Alignment:
| Q |
26 |
agggctgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagt |
125 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||| |
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| T |
26128835 |
agggttgttcttcatcaagggtccttctctttctctgtgctcaatcattgtatccaccaccacctcaaagattgagattgaaatggtagtattgtttagt |
26128934 |
T |
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| Q |
126 |
tctggttatatagggttgtgaag--ttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcagtacttggactttgat |
223 |
Q |
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||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | || | |
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| T |
26128935 |
tctggttatatagggttctgaagcttataggagggttaattaagaaatgaagaattgggtggtcagtttgagcacatgtattcagtacttctatttctaa |
26129034 |
T |
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| Q |
224 |
actgaatttgattgaactactagcctctcaaacattc-ttgatgggaatat |
273 |
Q |
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||| | || |||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
26129035 |
actaagttcgattgaactaaaagcctctcaaatattctttgatgggaatat |
26129085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 26048989 - 26049083
Alignment:
| Q |
113 |
agttttgtttagttctggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattca |
207 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |
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| T |
26048989 |
agttttgttttgttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattca |
26049083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 26038421 - 26038497
Alignment:
| Q |
45 |
ggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtt |
121 |
Q |
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||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||| |||| |||||||||||||| |
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| T |
26038421 |
ggtccttctctttctctgcgcccaatcattgtagctaccaccacctcaaagactgagattgagatggtagttttgtt |
26038497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 26121413 - 26121482
Alignment:
| Q |
31 |
tgttcttcatcaaaggtccttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactga |
100 |
Q |
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||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||||||||| |
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| T |
26121413 |
tgttcttcatcaagcgtccttctctttctctgagcccaatcattgtatccaccactacctcaaagactga |
26121482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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