View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_18 (Length: 426)
Name: NF4032_low_18
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 16810466 - 16810071
Alignment:
| Q |
7 |
gaaattactctcgtgttgttacgtgaaatagatctatagaaaattaataattaaagtacatgttttcaatattacatgaaattagtttacaaacacattc |
106 |
Q |
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| T |
16810466 |
gaaattactctcgtgttgttacgtgaaatagatctatagaaaattaataattaaagtacatgttttcaatattacatgaaattagtttacaaacacattc |
16810367 |
T |
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| Q |
107 |
ttaaataaatttatgttacataaatgattgttttcatttctcataataaataagaggtctcaccggatgctctgtgtgtgtatatatataaaagccttgt |
206 |
Q |
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| T |
16810366 |
ttaaataaatttatgttacataaatgattgttctcatttctcaaaataaataagaggtctcaccagatgctctctct----atatgtata------ttgt |
16810277 |
T |
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| Q |
207 |
aaaaaggaggaagagtcattgaaaaacaatgatgtttccaaagttcgaggtatagtcacatttaatgattgtatgaagaagatgagtggatatagtgcca |
306 |
Q |
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| T |
16810276 |
aaaaaggaggaagagtcattgaaaaacaatgatgtttccaaagttcgaggtatagtcacattcaatgattgtatgaagaagatgagtggatatagtgcca |
16810177 |
T |
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| Q |
307 |
taaatccattgaaaaacaatgacataagatgtttccaaagtttgagagatggtgaag-atatttgtatctgttggtgacagagaaatgatgtggtcgaga |
405 |
Q |
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| T |
16810176 |
taaatccattgaaaaacaatgacaaaagatgtttccaaagttagagagatggtgaagaatatttgtatctgttggtgacagagaaatgatgtggtcgaga |
16810077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 26821408 - 26821361
Alignment:
| Q |
127 |
taaatgattgttttcatttctcataataaataagaggtctcaccggat |
174 |
Q |
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| T |
26821408 |
taaataattgttctcatttctcacaataaataagagttctcaccggat |
26821361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 5365144 - 5365194
Alignment:
| Q |
124 |
acataaatgattgttttcatttctcataataaataagaggtctcaccggat |
174 |
Q |
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|||||||| | |||| |||||||||| |||||||||||| ||||||||||| |
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| T |
5365144 |
acataaataaatgttctcatttctcacaataaataagagttctcaccggat |
5365194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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