View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_20 (Length: 415)
Name: NF4032_low_20
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 154 - 399
Target Start/End: Complemental strand, 33557449 - 33557207
Alignment:
| Q |
154 |
ctgcatgtcattgataattattgctcctactgtaataatcaaacaatttggttcttatcatcattcctttgtgttaacctttttgaagtgtttggcatgg |
253 |
Q |
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| T |
33557449 |
ctgcatgtcattgataattattgctcctactgtaat---caaacaatttggttcttatcatcattcctttgtgttaacctttttgaagtgtttggcatgg |
33557353 |
T |
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| Q |
254 |
ttggaaaatcatatttatgagaaaagttacctattaactaaactttgttctccattgcccttttaactccacaacaaaacccctaggacaatggcggttt |
353 |
Q |
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| T |
33557352 |
ttggaaaatcatatttatgagaaaagttacctattaactaaactttgttctccattgccctcttaactaagcaacaaaacccctaggacaatggcggttt |
33557253 |
T |
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| Q |
354 |
gatttctataagcagcccttaaaagaaatccattatagatcacatt |
399 |
Q |
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| T |
33557252 |
gatttctataagcagcccttaaaataaatccattatagatcacatt |
33557207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 33557591 - 33557503
Alignment:
| Q |
10 |
attatactatgtctagctaagaggtagataaaatatgataagagaaagcagagaggttttgtactggaggttgtagaatt-aagtcctggtc |
100 |
Q |
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| T |
33557591 |
attatactaagtctagctaagaggtagataaaatatgat-agagaaagtagagaggttttgtac--gaggttgtagaattaaagtcctggtc |
33557503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 41179672 - 41179737
Alignment:
| Q |
200 |
tttggttcttatcatcattcctttgtgttaacctttt-tgaagtgtttggcatggttggaaaatca |
264 |
Q |
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| T |
41179672 |
tttgtttcttgtcatcattcctttgtgataatcttttttgaagtgtttggcatggttggaaaatca |
41179737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 34205953 - 34205878
Alignment:
| Q |
189 |
taatcaaacaatttggttcttatcatcattcctttgtgttaacctttttgaagtgtttggcatggttggaaaatca |
264 |
Q |
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| T |
34205953 |
taatcaaataattgggttcttatcatcattcctctgtggtattttttttgaagtgtttggcatggttgcaaaatca |
34205878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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