View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_25 (Length: 398)
Name: NF4032_low_25
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_25 |
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| [»] chr6 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0580 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 15177379 - 15177760
Alignment:
| Q |
17 |
catgaatggcgaattggaactcaatgaaacctcggccaaaagaaataagatgccattgaccaagatccttctaaaacgtttggagctttgaagtgagatc |
116 |
Q |
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| T |
15177379 |
catgaatggcgaattggaactcaatgaaacctcggccaaaagaaataagatgccattgaccaagatccttctaaaacgtttggagctttgaagtgagatc |
15177478 |
T |
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| Q |
117 |
acgggacattaatggtttgtcccttttactaataaccttatatcttcttcttgaagcttgccttttgaagtgactcccctcactgttgttcatactaata |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15177479 |
acgggacattaatggtttgtatcttttactaataaccttatatcttcttcttgaaacttgccttttgaagtgactcccctcactgttgttcatactaata |
15177578 |
T |
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| Q |
217 |
ctgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgt |
316 |
Q |
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| T |
15177579 |
ctgaagaaaccacccgaattcctaataatagaggactcattacgtgaaatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgt |
15177678 |
T |
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| Q |
317 |
tgttcatcctactcatgtcactatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctca |
398 |
Q |
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| T |
15177679 |
tgttcatcctattgatgtcgctatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctca |
15177760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 218 - 398
Target Start/End: Complemental strand, 15469839 - 15469659
Alignment:
| Q |
218 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgtt |
317 |
Q |
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| T |
15469839 |
tgaagaaaccacccgaattcctaataatagaagactcattgcgtgaaatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgtt |
15469740 |
T |
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| Q |
318 |
gttcatcctactcatgtcactatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctca |
398 |
Q |
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| T |
15469739 |
gttcatcctattgatgtcactatcatcaacgttgctcgtcatattgcatttaatgaagatttatagcttctctcatgctca |
15469659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 15176332 - 15176419
Alignment:
| Q |
218 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagt |
305 |
Q |
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| T |
15176332 |
tgaagaaaccacccgaattcctaataatagaatactcattgcgtgaaatatttcaagatggatttcaaacaaaaaaggggattctagt |
15176419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 15165409 - 15165441
Alignment:
| Q |
366 |
tttaatgaagatttatagcttctctcatgctca |
398 |
Q |
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| T |
15165409 |
tttaatgaagatttatagcttctctcatgctca |
15165441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 154 - 398
Target Start/End: Complemental strand, 23256267 - 23256024
Alignment:
| Q |
154 |
ttatatcttcttcttgaagcttgccttttgaagtgactcccctcactgttgttcatactaatactgaagaaaccacccgaattcctaataatagaggact |
253 |
Q |
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| T |
23256267 |
ttatatcttcctcttgaagcttgccttttgaagtgactcccctcactgttgttcatcctaatactaaagaaaccacc-gaattcctaataatagaggacc |
23256169 |
T |
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| Q |
254 |
cattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgttgttcatcctactcatgtcactatcatcaacgttggt |
353 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
23256168 |
cattgcgtgaaatatttcaagatggatttcaaacaagaaatgagattctagtgagaggattgttgttcatcctattgatgtcactatcatcaacgttggt |
23256069 |
T |
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| Q |
354 |
cgtcatattgcatttaatgaagatttatagcttctctcatgctca |
398 |
Q |
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| T |
23256068 |
cgtcatattgcctttaatgaagatttatagcttctctcatgctca |
23256024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 218 - 398
Target Start/End: Complemental strand, 382 - 202
Alignment:
| Q |
218 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgtt |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
382 |
tgaagaaaccacccgaattcctaataatagaagactcattgcgtgacatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgtt |
283 |
T |
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| Q |
318 |
gttcatcctactcatgtcactatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctca |
398 |
Q |
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|||||||||| | |||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
282 |
gttcatcctattgatgtcagtatcctcaacattggtcgtcatattgcctttaatgaagatttatagcttctttcatgctca |
202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 218 - 398
Target Start/End: Complemental strand, 8121 - 7941
Alignment:
| Q |
218 |
tgaagaaaccacccgaattcctaataatagaggactcattgcgtgaaatatttcaagatgtatttcaaacaagaaaggggattctagtgagaggactgtt |
317 |
Q |
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| T |
8121 |
tgaagaaaccacccgaattcctaataatagaagactcattgcgtgacatatttcaagatggatttcaaacaagaaaggggattctagtgagaggactgtt |
8022 |
T |
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| Q |
318 |
gttcatcctactcatgtcactatcatcaacgttggtcgtcatattgcatttaatgaagatttatagcttctctcatgctca |
398 |
Q |
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| T |
8021 |
gttcatcctattgatgtcagtatcctcaacattggtcgtcatattgcctttaatgaagatttatagcttctttcatgctca |
7941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 424 - 384
Alignment:
| Q |
157 |
tatcttcttcttgaagcttgccttttgaagtgactcccctc |
197 |
Q |
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| T |
424 |
tatcttcctcttgaagcttgcctttagaattgactcccctc |
384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 8163 - 8123
Alignment:
| Q |
157 |
tatcttcttcttgaagcttgccttttgaagtgactcccctc |
197 |
Q |
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| T |
8163 |
tatcttcctcttgaagcttgcctttagaattgactcccctc |
8123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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