View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4032_low_27 (Length: 389)
Name: NF4032_low_27
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 49688137 - 49688505
Alignment:
| Q |
1 |
tatccatatttggtgcaaggggaacgccaggatattgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49688137 |
tatccatatttggtgcaaggggaacgccaggatattgctccagagttgttctcccgaaattttggtggggtgtcccataaatcagatgtctacagttatg |
49688236 |
T |
|
| Q |
101 |
gaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtct |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49688237 |
gaatgatggt-----aaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtct |
49688331 |
T |
|
| Q |
201 |
tgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49688332 |
tgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaacc |
49688431 |
T |
|
| Q |
301 |
gatccttcacaccgataagcaattgataaagtggtggaaatgctggaagggagccttgaagtgctggaaatacc |
374 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49688432 |
gatccttcacaccgacaagcaatgcataaagtggtggaaatgctggaagggagccttgaagtgctggaaatacc |
49688505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 49683231 - 49683606
Alignment:
| Q |
1 |
tatccatatttggtgcaaggggaacgccaggatat--tgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagtta |
98 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||| |||||||||| ||||||| | |||||||||||||||| || |||||||||||||||||||| |
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|
| T |
49683231 |
tatcaatatttggtgcaagggggacaccaggatatattgctccagagctgttctctagacattttggtggggtgtcacacaaatcagatgtctacagtta |
49683330 |
T |
|
| Q |
99 |
tggaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgt |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
49683331 |
tggaatgatggttttagaaatggttggtcgaagaaagaacatcaaagttgaagtggattgttctagcgagttatattttccacattggatctacaagcgt |
49683430 |
T |
|
| Q |
199 |
cttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||| || |
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|
| T |
49683431 |
cttgaattgaatcaagatcttggactcaagtgtattaaaaatgaaattgatgaagagatggtaagaaagatgacaatggtgagtttatggtgcataccaa |
49683530 |
T |
|
| Q |
299 |
ccgatccttcacaccgataagcaattgataaagtggtggaaatgctggaagggagccttgaagtgctggaaatacc |
374 |
Q |
| |
|
|||| |||||||| ||| |||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||| |
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|
| T |
49683531 |
ccgacccttcacatcgaccagcaatgaataaagtggtggaaatgctagaagggagccttcaagtgctagaaatacc |
49683606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 49710841 - 49711216
Alignment:
| Q |
1 |
tatccatatttggtgcaaggggaacgccaggatat--tgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagtta |
98 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
49710841 |
tatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcagatgtctacagtta |
49710940 |
T |
|
| Q |
99 |
tggaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgt |
198 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
49710941 |
cggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactggatttacaagcgt |
49711040 |
T |
|
| Q |
199 |
cttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaa |
298 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49711041 |
cttgaattgaatcaggatcttggactcaagagtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagtttatggtgcatacaaa |
49711140 |
T |
|
| Q |
299 |
ccgatccttcacaccgataagcaattgataaagtggtggaaatgctggaagggagccttgaagtgctggaaatacc |
374 |
Q |
| |
|
|||| ||||| || ||| |||||| |||||||||||||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
49711141 |
ccgacccttctcatcgaccagcaatgcataaagtggtggaaatgctggaagggagtcttcaaatgctggaaatacc |
49711216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 49714482 - 49714856
Alignment:
| Q |
1 |
tatccatatttggtgcaaggggaacgccaggatat--tgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagtta |
98 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||| || ||||| |
|
|
| T |
49714482 |
tatccatatttgttgcg-ggggaacaccaggatatattgctccagagttgttctccagaaattttgacggggtgtcacataaatcagatgtttatagtta |
49714580 |
T |
|
| Q |
99 |
tggaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgt |
198 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||||||| || |||||||| |||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
49714581 |
tggaatgatggttttagaaatggttggccgaagaaagaacattaaggttgaagttgattgttccagcgagttatattttccacactggatttacaagcgt |
49714680 |
T |
|
| Q |
199 |
cttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaa |
298 |
Q |
| |
|
|||||||||||||| ||||||| ||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49714681 |
cttgaattgaatcaggatcttgaactgaggtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacgaa |
49714780 |
T |
|
| Q |
299 |
ccgatccttcacaccgataagcaattgataaagtggtggaaatgctggaagggagccttgaagtgctggaaatacc |
374 |
Q |
| |
|
| || ||||| || ||| || ||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
49714781 |
ctgacccttcgcatcgaccaggaatgcataaagtggtggaaatgttggaagggagccttcaagtgctggaaatacc |
49714856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 374
Target Start/End: Original strand, 49215504 - 49215871
Alignment:
| Q |
2 |
atccatatttggtgcaaggggaacgccaggatat--tgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttat |
99 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
49215504 |
atccgtatttggcgcaagaggaacgccaggatatattgctccagagttgttctccagacattttggtggggtgtcacataaatcagatgtttatagttat |
49215603 |
T |
|
| Q |
100 |
ggaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtc |
199 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||||||||||| || |||||||| ||||| || | |||||||||||| |||||||||||||||| |
|
|
| T |
49215604 |
ggaatgatggttttagaaatggtttgtcgaagaaagaacattaaggttgaagttgattg-------gagtaatattttccacactggatttacaagcgtc |
49215696 |
T |
|
| Q |
200 |
ttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaac |
299 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49215697 |
ttgaattgaatcaggatcttggactcaggtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatgacagtggtgagtttatggtgcatacaaac |
49215796 |
T |
|
| Q |
300 |
cgatccttcacaccgataagcaattgataaagtggtggaaatgctggaagggagccttgaagtgctggaaatacc |
374 |
Q |
| |
|
|| |||| | ||| |||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
49215797 |
agaccctttgaatcgaccagcaatgcataaagtggtggaaatgttggaagggagccttcaagtgcttgaaatacc |
49215871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 49725316 - 49725479
Alignment:
| Q |
58 |
aattttggtggggtgtcccataaatcagatgtctacagttatggaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggatt |
157 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
49725316 |
aattttggtgcagtgtcacataagtcagatgtttacagttatggaatgatggtcatggaaatggttgggaggagaaaaaacatcaacactgaagtggacc |
49725415 |
T |
|
| Q |
158 |
gttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttgg |
221 |
Q |
| |
|
| || || || |||||||||| |||||||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
49725416 |
gctcgagtgaaatatattttcctcattggatttacaaccgtcttgattcaaatcaggatcttgg |
49725479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 49728714 - 49728792
Alignment:
| Q |
34 |
attgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttatggaatgatggttt |
112 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| || || || ||||| ||||| || ||||||||||||||||||| |
|
|
| T |
49728714 |
attgctccagaagtgttctctagaaattttggtggcgtctctcacaaatctgatgtatatagttatggaatgatggttt |
49728792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 49728880 - 49728912
Alignment:
| Q |
172 |
tattttccacattggatttacaagcgtcttgaa |
204 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
49728880 |
tattttccacaatggatttacaagcgtcttgaa |
49728912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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