View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_3 (Length: 712)
Name: NF4032_low_3
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_3 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 9 - 697
Target Start/End: Complemental strand, 74830 - 74142
Alignment:
| Q |
9 |
acatcatcactatataaatcgaattaatttcataactcaatgtagtatatgttggcttcttttagacctacaaatatcttaataataaaatgaaatacat |
108 |
Q |
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| T |
74830 |
acatcatcacaatataaatcaaattaatttcacaactcaaagtaatatatgttggcttcttttagacctacaaatatcataataataaaatgaaatatat |
74731 |
T |
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| Q |
109 |
annnnnnnn-atcaatatccaataaattggttcaagaacatattattagactcgacctacatatccctacaccaaagcatataacccaatctaaacataa |
207 |
Q |
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| T |
74730 |
atttttttttatcaatatccaataaattggttcaagaacatattattagactcgaccttcatgtcccaacaccaaagcatataacccaatctaaacataa |
74631 |
T |
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| Q |
208 |
acaatagtctaaacaacttttgagaacaatataacatagattataataattctctgcttcgctatcatgatcaaacaccttgatattactcctttatctc |
307 |
Q |
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| T |
74630 |
acaatagtctaaacaacttttgagaacaaaataacatagattacaataattctccacttcgctatcttgatcaaacaccttgatattactcctttatctc |
74531 |
T |
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| Q |
308 |
gtcatgagagaatcctacatatattccatacaacaaaaacaaggagtgagatatgttatacctgactcaaagttgtatcatagtggcaatgcatagaaac |
407 |
Q |
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| T |
74530 |
gtcatgagagaatcctacatatattccatacaacaaaaacaaggagtgagatatgttatacctgactcaaagttgtatcatagtggcaatgcatagaaac |
74431 |
T |
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| Q |
408 |
aaacacacaaatatacannnnnnnaaaggcacaaatatacatttataacttcaaatcgtcaaaggtaaacatattcctatatgaaagatatatatcaaat |
507 |
Q |
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| T |
74430 |
aaacacacaaatatacatttttttaaaggcacaaaaatacatttataacttcaaaccgtcaaaggtaaacatatccctatacaaaagatatatatcaaat |
74331 |
T |
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| Q |
508 |
acagtattactacaattctactagtccatatacatgttgtaatgactactcatatacataaaaagttgactaggaggacaaggaaagtcaaaatagaaca |
607 |
Q |
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| T |
74330 |
acattatttcttcaattctactagtccatatacatgttgcaatgactactcatattca-aaaaagttgactaggaggacaaggaaagtcaaaatagaaca |
74232 |
T |
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| Q |
608 |
tcatgcaaaaaatatggctacttagtggtgtttgtgagtcggatatccatgactcaaaagagattaaatttgcattgaaggtatgataat |
697 |
Q |
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| T |
74231 |
tcatgcaaaaaatatggctacttagtggtgtttgtgagtcggatatccatgactcaaaagagattaaatttgcattgaagatatgataat |
74142 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 13721625 - 13721592
Alignment:
| Q |
389 |
agtggcaatgcatagaaacaaacacacaaatata |
422 |
Q |
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| T |
13721625 |
agtggtaatgcatagaaacaaacacacaaatata |
13721592 |
T |
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