View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4032_low_31 (Length: 343)
Name: NF4032_low_31
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_31 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 45303788 - 45303454
Alignment:
| Q |
9 |
agcaaaggcagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaact |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303788 |
agcaaaagcagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaact |
45303689 |
T |
|
| Q |
109 |
tcttcttgtcctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatgaactcaacttattcattt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303688 |
tcttcttgtcctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatgaactcaacttattcattt |
45303589 |
T |
|
| Q |
209 |
cacctcacacatacaaagaaagagaaaacgcttttatccacttaaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcccaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303588 |
cacctcacacatacaaagaaagagaaaacgcttttatccacttaaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcccaat |
45303489 |
T |
|
| Q |
309 |
aaggaatggagatcatggatgcactcatcatcatc |
343 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45303488 |
aaggaatggagatcatggatgcactgatcatcatc |
45303454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 45150682 - 45150590
Alignment:
| Q |
17 |
cagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaactt |
109 |
Q |
| |
|
||||| || |||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
45150682 |
cagatagacggctccaatttgatgaagctgaactacagcaagaaagaaactttatggaaaggaatgtcatgtggcatatgatgctgttaactt |
45150590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 45150317 - 45150267
Alignment:
| Q |
277 |
gaatctgatcaaacccttcaacttttcccaataaggaatggagatcatgga |
327 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45150317 |
gaatctgaccaaacccttcaacttttcccaataaggaatggaagtcatgga |
45150267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 45150492 - 45150446
Alignment:
| Q |
125 |
ctagcatgtccaccacaaccacagtaacaactagacttatggaccca |
171 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
45150492 |
ctagcatggccatcacaaccacagtaacaactacactaatggaccca |
45150446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University