View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_32 (Length: 343)
Name: NF4032_low_32
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 46959384 - 46959054
Alignment:
| Q |
1 |
ataggaacttcggcctccaaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggactatatctcgaaaatatttatcttccatcatact |
100 |
Q |
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| T |
46959384 |
ataggaacttcggcctccgaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggactacatctcgaaaatatttatcttccatcatact |
46959285 |
T |
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| Q |
101 |
ttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtgattt |
200 |
Q |
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| T |
46959284 |
ttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgtgtgaatcctcccgcttgtttttcaacaagtagtgattt |
46959185 |
T |
|
| Q |
201 |
gattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaatgacaatgggatggaatgagtagatgaacccttcatgttagatgt |
300 |
Q |
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| T |
46959184 |
gattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaatgacaatgggatattctgtacagatgaacccttcatgttagatgt |
46959085 |
T |
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| Q |
301 |
tggtttaaggcaattagaagttagttatgat |
331 |
Q |
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| T |
46959084 |
tggtttaaggcaattagaagttagttatgat |
46959054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 44522737 - 44522972
Alignment:
| Q |
3 |
aggaacttcggcctccaaagaaaccattaaatttgcctgcagtgatacctatccatgtgaaggactatatctcgaaaatatttatcttccatcatacttt |
102 |
Q |
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| T |
44522737 |
aggaacttcggccaccgaagaaaccattaaatttgcctgcagtgatgcttctccatgcgaaggactatatctggaaaatatttttcttcgatcatacttt |
44522836 |
T |
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| Q |
103 |
ggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtgatttga |
202 |
Q |
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| T |
44522837 |
ggaggaaatacaagatcttattgttggcaagctcatgg------ttctgctcagggttatgtgtaccctcctgtctgcttttcgacaagtagtgatttaa |
44522930 |
T |
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| Q |
203 |
ttcgacagaatgtcttgttagagacaaatcctgatattaatt |
244 |
Q |
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| T |
44522931 |
ttagacagaatgtcttgttagagccaaatcctgctattaatt |
44522972 |
T |
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