View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_33 (Length: 331)
Name: NF4032_low_33
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 13945436 - 13945111
Alignment:
| Q |
3 |
gacactttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
13945436 |
gacactttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggt |
13945337 |
T |
|
| Q |
100 |
tgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945336 |
tgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaa |
13945237 |
T |
|
| Q |
200 |
cttattttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13945236 |
cttattttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatg |
13945137 |
T |
|
| Q |
300 |
aatcttcgtgtggtcccctttgcttc |
325 |
Q |
| |
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||||||| |||| ||||||||||||| |
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| T |
13945136 |
aatcttcctgtgatcccctttgcttc |
13945111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 14086625 - 14086300
Alignment:
| Q |
3 |
gacactttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
14086625 |
gacactttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggt |
14086526 |
T |
|
| Q |
100 |
tgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086525 |
tgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaa |
14086426 |
T |
|
| Q |
200 |
cttattttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14086425 |
cttattttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatg |
14086326 |
T |
|
| Q |
300 |
aatcttcgtgtggtcccctttgcttc |
325 |
Q |
| |
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||||||| |||| ||||||||||||| |
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| T |
14086325 |
aatcttcctgtgatcccctttgcttc |
14086300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 23915162 - 23915194
Alignment:
| Q |
6 |
actttgttcaaaatatagcaagaagtgttgatg |
38 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
23915162 |
actttgtccaaaatatagcaagaagtgttgatg |
23915194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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