View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_34 (Length: 307)
Name: NF4032_low_34
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 41217165 - 41217450
Alignment:
| Q |
14 |
atatcagtgcttctaacagtaccaaattacatgaaaagagatatatataacttggttcaaggttacctcaactactaagtctagtgtccattaataactc |
113 |
Q |
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| T |
41217165 |
atatcagtgcgtctaacagtaccaaattacatgaaaagagatatatataacttggttcaaggttacctcaactgctaagtctagtgtccattaataactc |
41217264 |
T |
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| Q |
114 |
cttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccaggac |
213 |
Q |
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| T |
41217265 |
cttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccaggac |
41217364 |
T |
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| Q |
214 |
cagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccccgttttgatattcttc |
299 |
Q |
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| T |
41217365 |
cagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctccgtcgtcttcccccgttttgattttcttc |
41217450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 111 - 299
Target Start/End: Original strand, 41223043 - 41223230
Alignment:
| Q |
111 |
ctccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccag |
210 |
Q |
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| T |
41223043 |
ctccttcattgatggatattgaaaa-tgcttcggaccatttcctcttttcagatgccggtacaacagaatcatcgaggaaagggttccagaagcctctag |
41223141 |
T |
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| Q |
211 |
gaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccccgttttgatattcttc |
299 |
Q |
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| T |
41223142 |
gatcagacaaaacccagctcacttttgttggtggtcttgctaagttatggatggaacctctatcgtcttcccctattttgattttcttc |
41223230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 299
Target Start/End: Complemental strand, 16233977 - 16233789
Alignment:
| Q |
111 |
ctccttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttc-agatgttggtacaatagaatcatctaggaaagggctccagaagccacca |
209 |
Q |
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| T |
16233977 |
ctccttcattgatggatattgaaaa-tgcttgggaccatttcctcttttccagatgccggtacaatagaatcatcgaggatagggttccagaagcctcta |
16233879 |
T |
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| Q |
210 |
ggaccagacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccccgttttgatattcttc |
299 |
Q |
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| T |
16233878 |
ggatcagacaaaacccagcttacttttgttggtagtcttgctaagttatggatggaatctttatcggcttcccctattttgattttcttc |
16233789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 115 - 299
Target Start/End: Complemental strand, 1598606 - 1598423
Alignment:
| Q |
115 |
ttcattgaaggatattgaaaaatgtttcgttccatttcgtcttttcagatgttggtacaatagaatcatctaggaaagggctccagaagccaccaggacc |
214 |
Q |
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| T |
1598606 |
ttcattgatggatatcgaaaa-tgcttcggaccatttcctcttttcagatgctggtacaatataatcatctaggaaagggttccagaagccctcgggact |
1598508 |
T |
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| Q |
215 |
agacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctgtcgtcttcccccgttttgatattcttc |
299 |
Q |
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| T |
1598507 |
agacaaaacccagcttacttttgttggtggttttgttaagttatggatggaacctctatcgtcttcccccgttttgattttcttc |
1598423 |
T |
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