View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_36 (Length: 297)
Name: NF4032_low_36
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_36 |
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| [»] scaffold1902 (1 HSPs) |
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| [»] scaffold1374 (1 HSPs) |
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| [»] scaffold0590 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 46604969 - 46605260
Alignment:
| Q |
1 |
ttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatatttacttcgatagttattcatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46604969 |
ttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatatttacttcgataattattcatta |
46605068 |
T |
|
| Q |
101 |
ttttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgttataattcaaatgattatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46605069 |
ttttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgttataattcaaatgattatat |
46605168 |
T |
|
| Q |
201 |
acttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaacttgtgtaaaatcaattgaaagaggaattgctctgtg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46605169 |
acttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaacttgtgtaaaatcaattgaaagaggaattgctttgtg |
46605260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 45448018 - 45447727
Alignment:
| Q |
1 |
ttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatatttacttcgatagttattcatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45448018 |
ttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatatttatttcgatagttattcatta |
45447919 |
T |
|
| Q |
101 |
ttttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgttataattcaaatgattatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447918 |
ttttgctatacaaaattagaagaaaaattgctatacaaaaagttggcatcttctttaaatataggcatatatgattttgttataattcaaatgattatat |
45447819 |
T |
|
| Q |
201 |
acttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaacttgtgtaaaatcaattgaaagaggaattgctctgtg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
45447818 |
acttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaaattgtgtaaaatcaattgaaagaggaattgctttgtg |
45447727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 4962889 - 4962965
Alignment:
| Q |
112 |
aaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgttataattc |
188 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| ||| |||| ||||||||| ||| |||||||||||| ||||| |
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| T |
4962889 |
aaaattagaagaaaaattgatatacaaaaagttggtatcctcttcaaatataggtatagatgattttgttaaaattc |
4962965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 25561363 - 25561413
Alignment:
| Q |
203 |
ttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaac |
253 |
Q |
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| T |
25561363 |
ttccctgcaaatgattatacatataagtgatatcacaagactatagtcaac |
25561413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 25562080 - 25562117
Alignment:
| Q |
248 |
gtcaacaacttgtgtaaaatcaattgaaagaggaattg |
285 |
Q |
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|||||| |||| |||||||||||||||||||||||||| |
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| T |
25562080 |
gtcaacgacttatgtaaaatcaattgaaagaggaattg |
25562117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 33608870 - 33608680
Alignment:
| Q |
1 |
ttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaata---tttacttcgatagttattca |
97 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| || |||||||| |
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| T |
33608870 |
ttctgctcttattgttggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttagcaaatgcgtctacttcaatcgttattca |
33608771 |
T |
|
| Q |
98 |
ttattttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgttataattc |
188 |
Q |
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| T |
33608770 |
ttattttgctatacaaaattagaagaaaaattgctatacaaaaagttggcatcttctttaaatataggcatatatgattttgttataattc |
33608680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1902 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1902
Description:
Target: scaffold1902; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 857 - 924
Alignment:
| Q |
113 |
aaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgt |
180 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||| |
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| T |
857 |
aaattagaagaaaaattgatatacaaaaagttggcatcctctttaaatataggtatagatgattttgt |
924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1374 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1374
Description:
Target: scaffold1374; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 1038 - 1105
Alignment:
| Q |
113 |
aaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgt |
180 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||| |
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| T |
1038 |
aaattagaagaaaaattgatatacaaaaagttggcatcctctttaaatataggtatagatgattttgt |
1105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 2806 - 2739
Alignment:
| Q |
113 |
aaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgt |
180 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||| |
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|
| T |
2806 |
aaattagaagaaaaattgatatacaaaaagttggcatcctctttaaatataggtatagatgattttgt |
2739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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