View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_39 (Length: 280)
Name: NF4032_low_39
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_39 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 7048681 - 7048952
Alignment:
| Q |
1 |
tctactcactgtttaccttgatagacatttcattgcgagtacattgattatagtttgtattttcattcagctccattgaacctcctggttggaatggtgc |
100 |
Q |
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| T |
7048681 |
tctactcactgtttaccttgatagacatttcattgcgagtacattgattataggttgtattttcattcagctccattgaacctcctggttggaatgatgc |
7048780 |
T |
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| Q |
101 |
tcagaatctgttccataaaggtttgggtccccaaccttctcaaaggcgcacttcagccacaacacttgttgcttcgcgtggttccgcaactggtgttaca |
200 |
Q |
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| T |
7048781 |
tcagaatctgttccataaaggtttgggtccccaaccttctcaaaggcgcacttcagccacaacacttgttgcttcgcgtggttctgcaactggtgttaca |
7048880 |
T |
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| Q |
201 |
gccaaagtctatagatctccacacctcgaaagaaaccgttctcctcctatatcatacgcggatattgatgat |
272 |
Q |
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| T |
7048881 |
gccaaagtctatagatctccacacctcgaaagaaaccgttctcctcctatatcatacgcggatattgatgat |
7048952 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 7048962 - 7049036
Alignment:
| Q |
192 |
ggtgttacagccaaagtctatagatctccacacctcgaaagaaaccgttctcctcctatatcatacgcggatattgatgat |
272 |
Q |
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| T |
7048962 |
ggtgttacagccagagtctatacatctcca---cgcgaaagaacccgtt---ctcctatatcatatgcagatattgatgat |
7049036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 27727 - 27828
Alignment:
| Q |
5 |
ctcactgtttaccttgatagacatttcattgcgagtacattgattatagtttgtattttcattcagctccattgaacctcctggttggaatggtgctcag |
104 |
Q |
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| T |
27727 |
ctcactgtttacgttgatagatatttcattgcgagtacattgattatagtttgtattttcattcagctccattgaacctcctagttggagtgatggtcag |
27826 |
T |
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| Q |
105 |
aa |
106 |
Q |
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|| |
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| T |
27827 |
aa |
27828 |
T |
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