View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_42 (Length: 263)
Name: NF4032_low_42
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_42 |
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| [»] scaffold0580 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 15177738 - 15177989
Alignment:
| Q |
1 |
atttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15177738 |
atttatagcttctctcatgctcatacatagtcaaacaaaaagtgtagacacttcaaagacgtggaagatcattagtaagatattaaaaattaggaggtcg |
15177837 |
T |
|
| Q |
101 |
agcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgca |
199 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
15177838 |
agcgggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgag-aaaagaagcttcagaacaagtggaacagttgca |
15177936 |
T |
|
| Q |
200 |
aacatttgattccgcataaatgatgaccaaatatttgatgatattttacctatg |
253 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15177937 |
aacatttgattccgcat-aatgatgaccaaatatttgatgatattttacctatg |
15177989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 15165419 - 15165673
Alignment:
| Q |
1 |
atttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
15165419 |
atttatagcttctctcatgctcatacatagtcaaacaacgagagtagatacttcaaagacatggaaggtcattggtaagatattaaaaattaggaggtcg |
15165518 |
T |
|
| Q |
101 |
agcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgc- |
198 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
15165519 |
agcgggtttaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaataagaagcttcagaacaagtggaacagttgca |
15165618 |
T |
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| Q |
199 |
aaacatttgattccgcataaatgatgaccaaatatttgatgatattttacctatg |
253 |
Q |
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|||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||| |
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| T |
15165619 |
aaacatttgattccgcgtaaatgatgacaaaaaatttgatgatattttagctatg |
15165673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15469681 - 15469469
Alignment:
| Q |
1 |
atttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
15469681 |
atttatagcttctctcatgctcatacatagtcaaacaacgagtgtagttacttcaaagacgtggaaggtcattggtaagatattaaaacttaggaggtcg |
15469582 |
T |
|
| Q |
101 |
agcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgca |
199 |
Q |
| |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| || |
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| T |
15469581 |
agcgggttaaaaataacaacaaaaaagtgtgtgatggaaagagaacaagataccttgaaggatgagaataagaagcttcagaaccagtggaacagtttca |
15469482 |
T |
|
| Q |
200 |
aacatttgattcc |
212 |
Q |
| |
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||||||||||||| |
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| T |
15469481 |
aacatttgattcc |
15469469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 15176417 - 15176471
Alignment:
| Q |
193 |
agttgcaaacatttgattccgcataaatgatgaccaaatatttgatgatatttta |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15176417 |
agttgcaaacatttgattccgcataaatgatgaccaaatatttgatgatatttta |
15176471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 7963 - 7709
Alignment:
| Q |
1 |
atttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7963 |
atttatagcttctttcatgctcatacatagtcaaacaacaagtgtagatacttcacagacgtggaagatcattggtaagatattaaaaattaggaggttg |
7864 |
T |
|
| Q |
101 |
agcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgc- |
198 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
7863 |
agcgagttaaaaataacaacaaaaaagtatatgatggaaagagaacaagataccttgaaggatgagaataagaagcttcagaacaagtggaacagttgca |
7764 |
T |
|
| Q |
199 |
aaacatttgattccgcataaatgatgaccaaatatttgatgatattttacctatg |
253 |
Q |
| |
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|||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||| |
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| T |
7763 |
aaacatttgattccgcgtaaatgatgactaaaaatttgatgatattttagctatg |
7709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 224 - 1
Alignment:
| Q |
1 |
atttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
224 |
atttatagcttctttcatgctcatacatagtcaaacaacaagtgtagatacttcatagacgtggaagatcattggtaagatattaaaaattaggaggttg |
125 |
T |
|
| Q |
101 |
agcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgc- |
198 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
124 |
agcgagttaaaaataacaacaaaaaagtatatgatggaaagagaacaagataccttgaaggatgagaataagaagcttcagaacaagtggaacagttgca |
25 |
T |
|
| Q |
199 |
aaacatttgattccgcataaatga |
222 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
24 |
aaacatttgattccgcgtaaatga |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 23256046 - 23255793
Alignment:
| Q |
1 |
atttatagcttctctcatgctcatacatagtcaaacaacaagtgtagatacttcaaagacgtggaagatcattggtaagatattaaaaattaggaggtcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
23256046 |
atttatagcttctctcatgctcatacatagtgaaacaacgagtgtagatacttcaaagacgtggaaggtcattggtaagatattaaaagttaggaggtcg |
23255947 |
T |
|
| Q |
101 |
agcaggttaaaaataacaacaaaaaagtatgtgatggaaagagaacaagataccttgaaggatgagaaaaagaagcttcagaa-aagtgggacagttgc- |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||| | |||| |||||||| |
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| T |
23255946 |
agcaggttaaaaataacaacaaaaaagtatgtgatgggaagagaacaagataccttgaaggaagagaataagaagcttcggaacatgtggaacagttgca |
23255847 |
T |
|
| Q |
199 |
aaacatttgattccgcataaatgatgaccaaatatttgatgatattttacctat |
252 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
23255846 |
aaacatttgattccgcgtaaacgatgaccaaatatttgatgatattttaactat |
23255793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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