View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4032_low_56 (Length: 219)

Name: NF4032_low_56
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4032_low_56
NF4032_low_56
[»] scaffold0182 (1 HSPs)
scaffold0182 (19-204)||(25897-26082)
[»] chr7 (25 HSPs)
chr7 (107-203)||(21746132-21746233)
chr7 (106-203)||(21764655-21764756)
chr7 (22-170)||(21788768-21788922)
chr7 (27-90)||(21786055-21786118)
chr7 (31-168)||(21647401-21647550)
chr7 (25-108)||(15714162-15714245)
chr7 (63-170)||(21652734-21652853)
chr7 (63-108)||(21629536-21629581)
chr7 (22-90)||(21714725-21714793)
chr7 (107-170)||(21657066-21657129)
chr7 (63-92)||(21628756-21628785)
chr7 (63-92)||(21628816-21628845)
chr7 (63-92)||(21628876-21628905)
chr7 (63-92)||(21628936-21628965)
chr7 (63-92)||(21628996-21629025)
chr7 (63-92)||(21629056-21629085)
chr7 (63-92)||(21629116-21629145)
chr7 (63-92)||(21629176-21629205)
chr7 (63-92)||(21629236-21629265)
chr7 (63-92)||(21629296-21629325)
chr7 (63-92)||(21629356-21629385)
chr7 (63-92)||(21629476-21629505)
chr7 (63-92)||(21652614-21652643)
chr7 (63-92)||(21652674-21652703)
chr7 (106-147)||(21664727-21664768)


Alignment Details
Target: scaffold0182 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 25897 - 26082
Alignment:
Q  19 gggcacagtcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaacatagtgtatcaataccattaccaaatgagtcacccactcatct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25897 gggcacagtcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaatatagtgtatcaataccattaccaaatgagtcacccactcatct 25996  T
Q  119 tcttgatcatctgcgtaaactcaacctcactacatccaagtccaaggtacaagttaacaataaaaagcactagaaaagattgaaac 204  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25997 tcttgatcatctgcgtaaactcaacctcactacacccaagtccaaggtacaagttaacaataaaaagcactagaaaagattgaaac 26082  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 21746132 - 21746233
Alignment:
Q  107 acccactcatcttcttgatcatctgcgtaaactcaacctcactacatccaagtccaaggtacaag-----ttaacaataaaaagcactagaaaagattga 201  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||      | |||||||||||||||||||||| |||||    
T  21746132 acccactcatcttcttgatcttctgcataaactcaacctcactacatccaagtccaaggtacaatacaattaaacaataaaaagcactagaaaaaattga 21746231  T
Q  202 aa 203  Q
    ||    
T  21746232 aa 21746233  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 21764655 - 21764756
Alignment:
Q  106 cacccactcatcttcttgatcatctgcgtaaactcaacctcactacatccaagtccaaggtaca----agttaacaataaaaagcactagaaaagattga 201  Q
    |||||||||||||||| |||| || || |||| ||| |||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||    
T  21764655 cacccactcatcttctagatcttcagcataaagtcatcctcactacatccaagtccaaggtacacaacaattaacaataaaaagcactagaaaagattga 21764754  T
Q  202 aa 203  Q
    ||    
T  21764755 aa 21764756  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 21788768 - 21788922
Alignment:
Q  22 cacagtcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaacatagtgtatcaataccat-----taccaaat-gagtcacccactca 115  Q
    ||||| |||| |||||||||||||||| ||||||   ||| ||||||||||||||||||||||||||| ||      | |||  | ||| ||||||||||    
T  21788768 cacagccagataaggagaaggacatggttccaaaaggaaagggagaaggagaacatagtgtatcaataacaaatgagtcccagttagagacacccactca 21788867  T
Q  116 tcttcttgatcatctgcgtaaactcaacctcactacatccaagtccaaggtacaa 170  Q
    ||||||||||| || ||||||| ||| |||||||||||| || ||||||||||||    
T  21788868 tcttcttgatcttcagcgtaaaatcatcctcactacatctaattccaaggtacaa 21788922  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 21786055 - 21786118
Alignment:
Q  27 tcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaacatagtgtatcaatac 90  Q
    |||||||||||||||||||||| |||||| | ||| |||||||||||||||||| |||||||||    
T  21786055 tcagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatac 21786118  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 21647401 - 21647550
Alignment:
Q  31 agaaggagaaggacatgggtccaaagaaaaacggagaaggagaacatagtgtatcaataccattaccaaatgagt------------cacccactcatct 118  Q
    ||||||||||||| |||| | ||||   ||| |||||||||||||| |||||||||||||||||||||| |||||            |||||||||||||    
T  21647401 agaaggagaaggaaatggtttcaaaaggaaaaggagaaggagaacacagtgtatcaataccattaccaagtgagtcccaatcagagacacccactcatct 21647500  T
Q  119 tcttgatcatctgcgtaaactcaacctcactacatccaagtccaaggtac 168  Q
    | |||||| || ||||||||||| ||||| | |||| || ||||||||||    
T  21647501 ttttgatcttcagcgtaaactcatcctcaatccatctaattccaaggtac 21647550  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 15714162 - 15714245
Alignment:
Q  25 agtcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaacatagtgtatcaataccattaccaaatgagtcac 108  Q
    ||||| ||||||||||| ||  || |||||| | ||| ||||||||| || ||||||||||||||||||||| |||||||||||    
T  15714162 agtcaaagaaggagaagaacggggttccaaacagaaaaggagaaggacaatatagtgtatcaataccattacgaaatgagtcac 15714245  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 21652734 - 21652853
Alignment:
Q  63 ggagaaggagaacatagtgtatcaataccattaccaaatgagtcac------------ccactcatcttcttgatcatctgcgtaaactcaacctcacta 150  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||||            |||||||||||||||||| ||||| |||| ||| ||| ||||    
T  21652734 ggagaaggagaacatagtgtatcgataccttaaccaaatgagtcacagtcaaagacacccactcatcttcttgatcttctgcataaaatcatcctaacta 21652833  T
Q  151 catccaagtccaaggtacaa 170  Q
    |||| || ||||||||||||    
T  21652834 catctaattccaaggtacaa 21652853  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 21629536 - 21629581
Alignment:
Q  63 ggagaaggagaacatagtgtatcaataccattaccaaatgagtcac 108  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  21629536 ggagaaggagaacatagtgcatcaataccagtaccaaatgagtcac 21629581  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 21714725 - 21714793
Alignment:
Q  22 cacagtcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaacatagtgtatcaatac 90  Q
    |||||||||||||| |||||||||||| |||||| | ||| | |||| |||| |||||| |||||||||    
T  21714725 cacagtcagagaagaagaaggacatggttccaaaaagaaaagcagaaagagagcatagtttatcaatac 21714793  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 21657066 - 21657129
Alignment:
Q  107 acccactcatcttcttgatcatctgcgtaaactcaacctcactacatccaagtccaaggtacaa 170  Q
    |||||||||||||||||||| ||  || ||||||| ||||||||||||  | ||||||||||||    
T  21657066 acccactcatcttcttgatcttcaacggaaactcatcctcactacatcttattccaaggtacaa 21657129  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21628756 - 21628785
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21628756 ggagaaggagaacatagtgtatcaatacca 21628785  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21628816 - 21628845
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21628816 ggagaaggagaacatagtgtatcaatacca 21628845  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21628876 - 21628905
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21628876 ggagaaggagaacatagtgtatcaatacca 21628905  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21628936 - 21628965
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21628936 ggagaaggagaacatagtgtatcaatacca 21628965  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21628996 - 21629025
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21628996 ggagaaggagaacatagtgtatcaatacca 21629025  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21629056 - 21629085
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21629056 ggagaaggagaacatagtgtatcaatacca 21629085  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21629116 - 21629145
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21629116 ggagaaggagaacatagtgtatcaatacca 21629145  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21629176 - 21629205
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21629176 ggagaaggagaacatagtgtatcaatacca 21629205  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21629236 - 21629265
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21629236 ggagaaggagaacatagtgtatcaatacca 21629265  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21629296 - 21629325
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21629296 ggagaaggagaacatagtgtatcaatacca 21629325  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21629356 - 21629385
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21629356 ggagaaggagaacatagtgtatcaatacca 21629385  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21629476 - 21629505
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21629476 ggagaaggagaacatagtgtatcaatacca 21629505  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21652614 - 21652643
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21652614 ggagaaggagaacatagtgtatcaatacca 21652643  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 21652674 - 21652703
Alignment:
Q  63 ggagaaggagaacatagtgtatcaatacca 92  Q
    ||||||||||||||||||||||||||||||    
T  21652674 ggagaaggagaacatagtgtatcaatacca 21652703  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 21664727 - 21664768
Alignment:
Q  106 cacccactcatcttcttgatcatctgcgtaaactcaacctca 147  Q
    ||||||||||||||||||||| |||||||||| ||| |||||    
T  21664727 cacccactcatcttcttgatcttctgcgtaaaatcaccctca 21664768  T

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