View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4032_low_7 (Length: 577)
Name: NF4032_low_7
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4032_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 74 - 561
Target Start/End: Original strand, 4246698 - 4247156
Alignment:
| Q |
74 |
ggcctgagtttcatcaaattggtgatcatataaatattttatgttaatatggataaaattaaatagcatgtaatttctgttcacttggtttggtaagact |
173 |
Q |
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| T |
4246698 |
ggcctgagtttcatcaaattggtgatcatataaatattt-atgttaatatggataaaatta----------------------cttggtttggtaagact |
4246774 |
T |
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| Q |
174 |
catcgaatgtatttatgattannnnnnncacccacactagctaagcaaatgataaaatcaatttgaaagatatgtattaaaaaggataggtaatgtctat |
273 |
Q |
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| T |
4246775 |
tatcgaatgtatttatgattatttttttcacccacactagctaagcaaatgataagatcaatttgaaagatatgtattaaaaaggataggtaatgtctat |
4246874 |
T |
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| Q |
274 |
taaagtctggtcacatgtctaagtgaaataacgaaaccagagtaattttttacaaaatagtgtggttttgcttcagcattttgaactatccttttgagga |
373 |
Q |
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| T |
4246875 |
taaagtctggtcacatgtctaagtgaaataatgaaaccagagtaattttttacaagatagtgtggttttgcttcagcattttgaactatccttttgagga |
4246974 |
T |
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| Q |
374 |
gaagtgttttggattggagtagttgcttgaatcttgagtttaactggactcataccaaacaaatcctagcaaagtatttctttgagtaaagtggtatgtc |
473 |
Q |
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| T |
4246975 |
gaagtgttttggattggagtagttgcttgaatcttgagtttaactggactcataccaaacaaatcctagcaaagtatttctttgagtaaagtggta---- |
4247070 |
T |
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| Q |
474 |
attgtcatgggtgagaaagaaatgtattttgtttgttttttgtgtgaaaatgttcaatattgctcttggatgatattcaagttgatat |
561 |
Q |
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| T |
4247071 |
--tgtcatgggtgagaaagaaatgtattttgtttgttttttgtgtgaaaatgttcaatattgctcttggatgatattcaagttgatat |
4247156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 4246266 - 4246311
Alignment:
| Q |
19 |
cataggtaacatgcaaaaaagcactttgacattttatttgtttagt |
64 |
Q |
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| T |
4246266 |
cataggtaacatgcaaaaaagcactttgacattttatttgtttagt |
4246311 |
T |
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