View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4032_low_8 (Length: 567)

Name: NF4032_low_8
Description: NF4032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4032_low_8
NF4032_low_8
[»] chr7 (4 HSPs)
chr7 (204-549)||(5975597-5975942)
chr7 (202-242)||(38758268-38758308)
chr7 (108-161)||(5975510-5975564)
chr7 (1-35)||(5975403-5975437)
[»] chr3 (8 HSPs)
chr3 (108-166)||(1677127-1677186)
chr3 (180-242)||(3149330-3149392)
chr3 (203-307)||(55196577-55196682)
chr3 (108-170)||(26538804-26538867)
chr3 (207-242)||(27662566-27662601)
chr3 (1-35)||(13645226-13645260)
chr3 (108-170)||(13645335-13645399)
chr3 (202-242)||(26538899-26538939)
[»] chr2 (2 HSPs)
chr2 (197-242)||(28167276-28167321)
chr2 (180-243)||(44906064-44906127)
[»] chr5 (1 HSPs)
chr5 (202-242)||(6535593-6535633)
[»] chr4 (5 HSPs)
chr4 (202-242)||(11148418-11148458)
chr4 (108-307)||(20945864-20946064)
chr4 (204-242)||(41245926-41245964)
chr4 (202-242)||(34539749-34539789)
chr4 (203-242)||(2671610-2671649)
[»] chr8 (2 HSPs)
chr8 (203-307)||(7274603-7274707)
chr8 (207-243)||(45447073-45447109)
[»] chr1 (1 HSPs)
chr1 (202-242)||(13222981-13223021)
[»] chr6 (1 HSPs)
chr6 (192-242)||(1134208-1134258)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 204 - 549
Target Start/End: Original strand, 5975597 - 5975942
Alignment:
Q  204 atgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggaagtttttcttat 303  Q
    ||||||||||||||||||||||||||||||||||| ||||       ||||||| |||||||||||||||||||| ||||| |||||| |||||||||||    
T  5975597 atgtcaaaaggttaagtaaatacaagggttgtttcacaatgaaaaaagatacatggactaaaacaaaaaatgcacaaacttacgaggacgtttttcttat 5975696  T
Q  304 ttaaaccaaaatattactaatatcacttacggtcaaactaagatatattta--gagtcaaactatcatttttactaaaaccacaattgataaaaatgaag 401  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  |    
T  5975697 ttaaaccaaaatattactaatatcacttacagtcaaactcagatatatttatagagtcaaactatcatttttactaaaaccacaattgataaaaatg--g 5975794  T
Q  402 ttagttttaatatttttcaactttatatcaaacacacacttttgataagacataccaatttaacttctcttttctgtttgtacaaattcaagcagctttg 501  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5975795 ttagttttaatatttttcaactttatatgaaacacacacttttgataagacataccaatttaacttttcttttctgtttgtacaaattcaagcagctttg 5975894  T
Q  502 atggacaccaaataacacatggttctgcaggggaagagaagggaaata 549  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  5975895 atggacaccaaataacacatggttctgcagtggaagagaagggaaata 5975942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 38758268 - 38758308
Alignment:
Q  202 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  38758268 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 38758308  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 5975510 - 5975564
Alignment:
Q  108 agtccctctactaaccagttgtcaactcatcaa-tgccacatattggtccgttaa 161  Q
    ||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||    
T  5975510 agtccctctactaaccagttgccaattcatcaagtgccatatattggtccgttaa 5975564  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5975403 - 5975437
Alignment:
Q  1 gaaagaacatagtgaggaacaaggtggaaagaata 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  5975403 gaaagaacataatgaggaacaaggtggaaagaata 5975437  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 1677186 - 1677127
Alignment:
Q  108 agtccctctactaaccagttgtcaactcatca-atgccacatattggtccgttaatcagc 166  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  1677186 agtccctctaataaccaattgtcaactcatcatatgccacatattggtccgttaaccagc 1677127  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 3149392 - 3149330
Alignment:
Q  180 gacggaaacagctggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||||||| ||  ||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  3149392 gacggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaa 3149330  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 55196682 - 55196577
Alignment:
Q  203 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnn-gatacatagactaaaacaaaaaatgcacgaacttgcgaggaagtttttctt 301  Q
    |||||||||  |||||||||||||| ||||||||||||||         ||||||| ||||||||| |||||||| ||||||| | ||||  ||||||||    
T  55196682 aatgtcaaagtgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttctt 55196583  T
Q  302 atttaa 307  Q
    ||||||    
T  55196582 atttaa 55196577  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 26538804 - 26538867
Alignment:
Q  108 agtccctctactaaccagttgtcaactcatcaa-tgccacatattggtccgttaatcagcaatg 170  Q
    ||||||||||||||||||||| ||||||||||| ||| || |||||||| ||||  ||||||||    
T  26538804 agtccctctactaaccagttgccaactcatcaagtgctacctattggtcagttagccagcaatg 26538867  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 27662566 - 27662601
Alignment:
Q  207 tcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27662566 tcaaaaggttaagtaaatacaagggttgttttgcaa 27662601  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13645226 - 13645260
Alignment:
Q  1 gaaagaacatagtgaggaacaaggtggaaagaata 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  13645226 gaaagaacatagtgaggaagaaggtggaaagaata 13645260  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 13645335 - 13645399
Alignment:
Q  108 agtccctctactaaccag-ttgtcaactcatcaa-tgccacatattggtccgttaatcagcaatg 170  Q
    |||||||||||||||||| || |||||||||||| ||||||||||| | ||||||  ||||||||    
T  13645335 agtccctctactaaccagtttatcaactcatcaagtgccacatattagcccgttagccagcaatg 13645399  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 26538899 - 26538939
Alignment:
Q  202 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  26538899 caatgtcaaaaggttaaataaatacaaaggttatttcgcaa 26538939  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 28167276 - 28167321
Alignment:
Q  197 gagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  28167276 gagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaa 28167321  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 44906064 - 44906127
Alignment:
Q  180 gacggaaacagctggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaat 243  Q
    |||||||| ||  ||| |||| |||| |||||||||||||||||||||| | ||||||||||||    
T  44906064 gacggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaaagattgtttcgcaat 44906127  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 6535593 - 6535633
Alignment:
Q  202 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6535593 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 6535633  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 11148458 - 11148418
Alignment:
Q  202 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  11148458 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 11148418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 307
Target Start/End: Complemental strand, 20946064 - 20945864
Alignment:
Q  108 agtccctctactaaccagttgtcaactcatca-atgccacatattggtccgttaatcagcaatgtannnnnnngacggaaacagctggccgagaacaatg 206  Q
    |||||||||| |||||| ||| |||||||||| |||||||||||| |||||||| ||||||| |         ||||||||| |   || | ||  ||||    
T  20946064 agtccctctaataaccaattgccaactcatcatatgccacatattagtccgttagtcagcaaagcgtttttttgacggaaacggacagcagggacgaatg 20945965  T
Q  207 tcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggaagtttttcttattta 306  Q
     ||||| |||||||||||| | || |||||||||||        |||||| ||||||||||||||||||| ||||||| | | ||  |||||||||||||    
T  20945964 ccaaaatgttaagtaaatatagggattgtttcgcaacaaaaaaagatacaaagactaaaacaaaaaatgcgcgaacttacaaagacctttttcttattta 20945865  T
Q  307 a 307  Q
    |    
T  20945864 a 20945864  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 41245964 - 41245926
Alignment:
Q  204 atgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  41245964 atgtcaaaaggttaagtaaatataagggttgtttcgcaa 41245926  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 34539749 - 34539789
Alignment:
Q  202 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  34539749 caatttcaaaaggttaagtaaatataagggttgtttcgcaa 34539789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 2671649 - 2671610
Alignment:
Q  203 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  2671649 aatgtcaaaatgttaagtaaatacaggggttgtttcgcaa 2671610  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 7274603 - 7274707
Alignment:
Q  203 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggaagtttttctta 302  Q
    |||||||||| |||||||||||||| ||||||||||||||        ||||||   ||||||||||||||||| ||||||| |  |||  |||||||||    
T  7274603 aatgtcaaaatgttaagtaaatacaggggttgtttcgcaacaaaaaaagatacaggaactaaaacaaaaaatgcgcgaacttacagggacctttttctta 7274702  T
Q  303 tttaa 307  Q
    |||||    
T  7274703 tttaa 7274707  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 45447109 - 45447073
Alignment:
Q  207 tcaaaaggttaagtaaatacaagggttgtttcgcaat 243  Q
    |||||| |||||| |||||||||||||||||||||||    
T  45447109 tcaaaaagttaagaaaatacaagggttgtttcgcaat 45447073  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 13223021 - 13222981
Alignment:
Q  202 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  13223021 caatttcaaaaggttaaataaatacaagggttgtttcgcaa 13222981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 1134258 - 1134208
Alignment:
Q  192 tggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 242  Q
    |||| |||| |||| ||||||| |||||| |||||||||||||||||||||    
T  1134258 tggcagagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaa 1134208  T

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