View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4033_high_1 (Length: 1024)

Name: NF4033_high_1
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4033_high_1
NF4033_high_1
[»] chr2 (14 HSPs)
chr2 (217-503)||(44749020-44749306)
chr2 (504-711)||(44748769-44748964)
chr2 (154-392)||(44748510-44748749)
chr2 (903-979)||(15540210-15540286)
chr2 (217-302)||(44625149-44625235)
chr2 (48-93)||(44749316-44749361)
chr2 (49-116)||(39139773-39139839)
chr2 (29-116)||(39471697-39471783)
chr2 (217-312)||(44615939-44616034)
chr2 (674-771)||(832430-832530)
chr2 (740-780)||(15540053-15540093)
chr2 (986-1017)||(44752617-44752648)
chr2 (51-105)||(39452050-39452104)
chr2 (70-123)||(39420059-39420111)
[»] chr5 (1 HSPs)
chr5 (29-120)||(17060974-17061067)
[»] chr7 (3 HSPs)
chr7 (49-103)||(19810032-19810086)
chr7 (868-913)||(27136098-27136143)
chr7 (690-744)||(20277049-20277103)
[»] chr4 (1 HSPs)
chr4 (674-734)||(39073939-39074001)
[»] chr8 (2 HSPs)
chr8 (74-120)||(45343520-45343566)
chr8 (690-744)||(29345785-29345839)
[»] chr6 (1 HSPs)
chr6 (930-979)||(11654974-11655022)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-148; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 217 - 503
Target Start/End: Complemental strand, 44749306 - 44749020
Alignment:
Q  217 acacctttcagattttattgagaatgttatcaagatgaagaaattgattcagttacttggctgagaagaatcaacaagattttgcactaggaaaatctaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44749306 acacctttcagattttattgagaatgttatcaagatgaagaaattgattcagttacttggctgagaagaatcaacaagattttgcactaggaaaatctaa 44749207  T
Q  317 aagaaatgtggtgtagtagaaacctgctaatagaatcacaatgttccctgaaagctgatttcaccaaagtaactgaataggttctttttaatagacctca 416  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  44749206 aagaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaagtaactgaataggttctttttaataaacctca 44749107  T
Q  417 agtaaaattacaaagtaatactactagtcaactataggccgttattttttaactccattgtaaagtacttaacttaaggttaagagg 503  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44749106 agtaaaattacaaaataatactactagtcaactataggccgttattttttaattccattgtaaagtacttaacttaaggttaagagg 44749020  T

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Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 504 - 711
Target Start/End: Complemental strand, 44748964 - 44748769
Alignment:
Q  504 aacacatcaatggtgagaagatttgaagaaggaagacaaatttgtagagcgtcagccacttggagaaaaaagatcaaccagtttgttcctttccttcttg 603  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44748964 aacacatcaacggtgagaagatttgaagaaggaagacaaatttgtagagcgtcagccacttggagaaaaaagatcaaccagtttgttcctttccttcttg 44748865  T
Q  604 gttgcaagattaagaggtgtgcagaggggaattttatatagtacatgttacattgaattgaatgaaaatttgtaattgaaattgtggcatggttcatttc 703  Q
    ||||||||||||||||||||||||||| |||||||||||  |||            ||||||||||||||||||||||||||||||||||||||||||||    
T  44748864 gttgcaagattaagaggtgtgcagaggagaattttatatgctac------------attgaatgaaaatttgtaattgaaattgtggcatggttcatttc 44748777  T

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Target: chr2; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 154 - 392
Target Start/End: Original strand, 44748510 - 44748749
Alignment:
Q  154 tttttgttagcaagaacttatttaagcctatatcctataagttttgatgaagtgaannnnnnn-acacctttcagattttattgagaatgttatcaagat 252  Q
    ||||||||||||||||||||| || ||||| || ||| ||||||| ||||||||||        ||||||| |||||||| |||||||| ||||||||||    
T  44748510 tttttgttagcaagaacttatgta-gcctacattctagaagtttttatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagat 44748608  T
Q  253 gaagaaatt-gattcagttacttggctgagaagaatcaacaagattttgcactaggaaaatctaaaagaaatgtggtgtagtagaaacctgctaatagaa 351  Q
    ||||||||| ||||||||||||||  || |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  44748609 gaagaaatttgattcagttacttgattgggaagaatcaacaagtttttgcactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaa 44748708  T
Q  352 tcacaatgttccctgaaagctgatttcaccaaagtaactga 392  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  44748709 tcacaatgttccctgaaagctgatttcacaaaagtaactga 44748749  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 903 - 979
Target Start/End: Original strand, 15540210 - 15540286
Alignment:
Q  903 tactaatgatgtttcaaaactgttacaaaaaatgtaaacaagtaacatttttcaagtgttgctaataatactaaaaa 979  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  15540210 tactaatgatgattcaaaactgttacaaaaaatgtaaacaagtaacattttttaattgttactaataatactaaaaa 15540286  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 217 - 302
Target Start/End: Original strand, 44625149 - 44625235
Alignment:
Q  217 acacctttcagattttattgagaatgttatcaagatgaagaaatt-gattcagttacttggctgagaagaatcaacaagattttgca 302  Q
    ||||||| |||||||| |||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||| |||||| |||||||    
T  44625149 acaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagtttttgca 44625235  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 44749361 - 44749316
Alignment:
Q  48 agcttcattttgtttccccaaacagttttgtcaattgttaagagaa 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44749361 agcttcattttgtttccccaaacagttttgtcaattgttaagagaa 44749316  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 39139773 - 39139839
Alignment:
Q  49 gcttcattttgtttccccaaacagttttgtcaattgttaagagaaaattgacatcttgggtgttaatg 116  Q
    |||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||| ||||||||||    
T  39139773 gcttcattttgtttcccccaacagttctatcatttgttaagagaaaattgacatctt-ggtgttaatg 39139839  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 39471783 - 39471697
Alignment:
Q  29 aaattgaactcatgtgattagcttcattttgtttccccaaacagttttgtcaattgttaagagaaaattgacatcttgggtgttaatg 116  Q
    |||||||||||| || ||| |||| ||||||| ||| | ||||||| | ||| |||||||||||||||||||||||| ||||||||||    
T  39471783 aaattgaactcacgtaattggctttattttgtgtccgctaacagttctatcatttgttaagagaaaattgacatctt-ggtgttaatg 39471697  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 44615939 - 44616034
Alignment:
Q  217 acacctttcagattttattgagaatgttatcaagatgaagaaatt-gattcagttacttggctgagaagaatcaacaagattttgcactaggaaaat 312  Q
    ||||||| |||||||| |||||||   | |||||||||||||||| |||||||||| ||||| |||||| ||||||||| || |||||||| |||||    
T  44615939 acaccttgcagattttgttgagaaatat-tcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagtttctgcactagaaaaat 44616034  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 674 - 771
Target Start/End: Complemental strand, 832530 - 832430
Alignment:
Q  674 tgtaattgaaattgtg---gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatatcaggtgtcttgaatctaattaaagtt 770  Q
    ||||||||||||||||   | || ||| ||||||| |||||||||||||||||||| ||||||| |||  ||||  || ||||||| ||||| |||||||    
T  832530 tgtaattgaaattgtgtttgtatagtttatttccattatgaaatccaatttcaaatgtttgtatgagaatatatttggagtcttgagtctaaataaagtt 832431  T
Q  771 t 771  Q
    |    
T  832430 t 832430  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 740 - 780
Target Start/End: Original strand, 15540053 - 15540093
Alignment:
Q  740 catatcaggtgtcttgaatctaattaaagtttgatcttcaa 780  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  15540053 catatcaagagtcttgaatctaattaaagtttgatcttcaa 15540093  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 986 - 1017
Target Start/End: Complemental strand, 44752648 - 44752617
Alignment:
Q  986 ggtgatgatcatttgagtggtggtgatgatgt 1017  Q
    ||||||||||||||||||||||||||||||||    
T  44752648 ggtgatgatcatttgagtggtggtgatgatgt 44752617  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 39452050 - 39452104
Alignment:
Q  51 ttcattttgtttccccaaacagttttgtcaattgttaagagaaaattgacatctt 105  Q
    |||||||||||||||| ||| ||| | ||| |||||||| |||||||||||||||    
T  39452050 ttcattttgtttcccccaactgttgtctcatttgttaagggaaaattgacatctt 39452104  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 39420111 - 39420059
Alignment:
Q  70 cagttttgtcaattgttaagagaaaattgacatcttgggtgttaatgtttgtaa 123  Q
    ||||| ||||| ||||||||||||||||||||||||  ||||||||| ||||||    
T  39420111 cagttctgtcatttgttaagagaaaattgacatctt-tgtgttaatgcttgtaa 39420059  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 17060974 - 17061067
Alignment:
Q  29 aaattgaactcatgtg--attagcttcattttgtttccccaaacagttttgtca-attgttaagagaaaattgacatcttgggtgttaatgtttg 120  Q
    ||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||  ||||| | |||||||||||||||| ||||||||| ||||    
T  17060974 aaattgaactcatatgcaattagctttattttgtttcccctaacagttttgtcattttgttgaaagaaaattgacatctt-ggtgttaatttttg 17061067  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 19810032 - 19810086
Alignment:
Q  49 gcttcattttgtttccccaaacagttttgtcaattgttaagagaaaattgacatc 103  Q
    |||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||    
T  19810032 gcttcattttgtttcccctaacagttctatcatttgttaagagaaaattgacatc 19810086  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 868 - 913
Target Start/End: Complemental strand, 27136143 - 27136098
Alignment:
Q  868 gcaaaaattataagtaggcgacaattttttattgttactaatgatg 913  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  27136143 gcaaaaattataagtaggcaacattttattattgttactaatgatg 27136098  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 744
Target Start/End: Original strand, 20277049 - 20277103
Alignment:
Q  690 gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatat 744  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||||| ||| |||||    
T  20277049 gcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatat 20277103  T

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Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 674 - 734
Target Start/End: Original strand, 39073939 - 39074001
Alignment:
Q  674 tgtaattgaaattgtg--gcatggttcatttccactatgaaatccaatttcaaatttttgtat 734  Q
    ||||||||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||    
T  39073939 tgtaattgaaattgtgttgcatagttcatttccaatatgaaatcaaatttcaaatatttgtat 39074001  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 45343520 - 45343566
Alignment:
Q  74 tttgtcaattgttaagagaaaattgacatcttgggtgttaatgtttg 120  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  45343520 tttgtcatttgttaatagaaaattgacatcttgggcgttaatgtttg 45343566  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 744
Target Start/End: Complemental strand, 29345839 - 29345785
Alignment:
Q  690 gcatggttcatttccactatgaaatccaatttcaaatttttgtattagagcatat 744  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||||| ||| |||||    
T  29345839 gcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatat 29345785  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 930 - 979
Target Start/End: Original strand, 11654974 - 11655022
Alignment:
Q  930 aaaaatgtaaacaagtaacatttttcaagtgttgctaataatactaaaaa 979  Q
    ||||||||||||||||||||||||| || |||| ||||| ||||||||||    
T  11654974 aaaaatgtaaacaagtaacattttttaattgttactaat-atactaaaaa 11655022  T

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