View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4033_high_16 (Length: 429)

Name: NF4033_high_16
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4033_high_16
NF4033_high_16
[»] chr7 (2 HSPs)
chr7 (14-103)||(3077441-3077530)
chr7 (20-108)||(4342642-4342730)
[»] chr3 (15 HSPs)
chr3 (357-414)||(27430422-27430479)
chr3 (357-410)||(28152283-28152336)
chr3 (357-414)||(17743950-17744007)
chr3 (357-414)||(19045270-19045327)
chr3 (357-401)||(28057816-28057860)
chr3 (357-401)||(28068241-28068285)
chr3 (357-401)||(28187290-28187334)
chr3 (357-406)||(27920838-27920887)
chr3 (357-406)||(27954807-27954856)
chr3 (357-401)||(8538568-8538612)
chr3 (357-395)||(30993969-30994007)
chr3 (357-414)||(11421855-11421912)
chr3 (357-406)||(28038143-28038192)
chr3 (357-410)||(28163280-28163333)
chr3 (357-396)||(18078689-18078728)
[»] scaffold0922 (1 HSPs)
scaffold0922 (357-414)||(2369-2426)
[»] scaffold0257 (1 HSPs)
scaffold0257 (357-401)||(19731-19775)
[»] chr2 (2 HSPs)
chr2 (20-96)||(31330660-31330736)
chr2 (20-96)||(31337381-31337457)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 3077530 - 3077441
Alignment:
Q  14 agaaatcaaatgcaataacaacttatgcttctaatcattcaacataacttaaacaatatctcaaaataatcacttttgcctcacttttag 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  3077530 agaaatcaaaggcaataacaacttatgcttctaatcattcaacataacttaaactatatctcaaaataatcatttttacctcacttttag 3077441  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 4342642 - 4342730
Alignment:
Q  20 caaatgcaataacaacttatgcttctaatcattcaacataacttaaacaatatctcaaaataatcacttttgcctcacttttagtttaa 108  Q
    |||| ||||||||| ||||||||| |||| | |||||||||||||||     ||||||||||| ||||||| ||||| |||||| ||||    
T  4342642 caaaggcaataacagcttatgcttataattaatcaacataacttaaatttcttctcaaaataagcacttttacctcaattttagcttaa 4342730  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 27430479 - 27430422
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagatttcctttt 414  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27430479 aggttcaagccactctgaatttgttgagttattacaagatgtgcgtagatttcctttt 27430422  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 28152283 - 28152336
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagatttcc 410  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  28152283 aggttcaagcaactctgaatttgttgagttattacaagatgtgcgtagatttcc 28152336  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 17744007 - 17743950
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagatttcctttt 414  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  17744007 aggttcaagcaactctgaatttgtcgagttattacaagatgtgcgcagatttcctttt 17743950  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 19045327 - 19045270
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagatttcctttt 414  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  19045327 aggttcaagcaactctgaatttgtcgagttattacaagatgtgcgcagatttcctttt 19045270  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 28057816 - 28057860
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcg 401  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  28057816 aggttcaagccactctgaatttgttgagttattacaagatgtgcg 28057860  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 28068241 - 28068285
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcg 401  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  28068241 aggttcaagccactctgaatttgttgagttattacaagatgtgcg 28068285  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 28187290 - 28187334
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcg 401  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  28187290 aggttcaagccactctgaatttgttgagttattacaagatgtgcg 28187334  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 27920838 - 27920887
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagat 406  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  27920838 aggttcaagccactctgaatttgttgatttattacaagatgtgcgcagat 27920887  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 27954807 - 27954856
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagat 406  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  27954807 aggttcaagccactctgaatttgttgatttattacaagatgtgcgcagat 27954856  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 8538612 - 8538568
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcg 401  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  8538612 aggttcaagccaatctgaatttgttgagttattacaagatgtgcg 8538568  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 30993969 - 30994007
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaaga 395  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  30993969 aggttcaagccactctgaatttgttgagttattagaaga 30994007  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 11421855 - 11421912
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagatttcctttt 414  Q
    |||||||||  |||||  ||||||||||||| || |||||||||||||||||||||||    
T  11421855 aggttcaagaaactctacatttgttgagttaatacaagatgtgcgtagatttcctttt 11421912  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 28038143 - 28038192
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagat 406  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||| ||||    
T  28038143 aggttcaagccacactgaatttgttgagttgttacaagatgtgcgcagat 28038192  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 28163280 - 28163333
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagatttcc 410  Q
    ||||||||||||||||||||||||||||||| || ||||||  || ||||||||    
T  28163280 aggttcaagccactctgaatttgttgagttactacaagatgcacgcagatttcc 28163333  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 18078728 - 18078689
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagat 396  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  18078728 aggttcaagccattctgaatttgttgagttattacaagat 18078689  T

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Target: scaffold0922 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 2369 - 2426
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcgtagatttcctttt 414  Q
    |||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||    
T  2369 aggttcaagccattctgaatttgttgagctattacaagatatgcgtagatttcctttt 2426  T

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Target: scaffold0257 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 19731 - 19775
Alignment:
Q  357 aggttcaagccactctgaatttgttgagttattaaaagatgtgcg 401  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  19731 aggttcaagccactctgaatttgttgagttactacaagatgtgcg 19775  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 31330736 - 31330660
Alignment:
Q  20 caaatgcaataacaacttatgcttctaatcattcaacataacttaaacaatatctcaaaataatcacttttgcctca 96  Q
    |||||| ||||||| ||||| |||||||| | |||||||||||||||     ||||||||||||||||||| |||||    
T  31330736 caaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctca 31330660  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 31337457 - 31337381
Alignment:
Q  20 caaatgcaataacaacttatgcttctaatcattcaacataacttaaacaatatctcaaaataatcacttttgcctca 96  Q
    |||||| ||||||| ||||| |||||||| | |||||||||||||||     ||||||||||||||||||| |||||    
T  31337457 caaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctca 31337381  T

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