View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_high_17 (Length: 417)
Name: NF4033_high_17
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 42444880 - 42445259
Alignment:
| Q |
22 |
gtcgaaatggaaagggagatgcgaacttaatggtacagtttgtaacaacaaattaattggagcaagatccttcaacaatgcagcagtaaaaggagagaaa |
121 |
Q |
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| T |
42444880 |
gtcgaaatggaaagggagatgcaaacttaatggtacagtttgtaacaacaaattaattggagcaagatccttcaacaatgcagcagtaaaaggagagaaa |
42444979 |
T |
|
| Q |
122 |
gctgaagcaccaattgatgaggatggacacgggactcacacagcaagtacagcggctggtgcttttgtcgacaatgcagaagtgctaggaaatgctaaag |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42444980 |
gctgaagcaccaattgatgaggatggacacgggactcacacagcaagtacagcggctggtgcttttgtcgaaaatgcagaagtgctaggaaatgctaaag |
42445079 |
T |
|
| Q |
222 |
gtacggcagcagggatggctcctcatgctcacctagcaatttacaaagtgtgctttggagaagactgtgccgagagtaatatacttgcggcattagatgc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445080 |
gtacggcagcagggatggctcctcatgctcacctagcaatttacaaagtgtgctttggagaagactgtgccgagagtaatatacttgcggcattagatgc |
42445179 |
T |
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| Q |
322 |
agctgtggaggatggtgtggatgtaatatcgatatcacttggtctaagtgagcctcctccatttttcaatgatagcactg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445180 |
agctgtggaggatggtgtggatgtaatatcgatatcacttggtctaagtgagcctcctccatttttcaatgatagcactg |
42445259 |
T |
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