View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4033_high_2 (Length: 915)
Name: NF4033_high_2
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 224 - 905
Target Start/End: Complemental strand, 41788080 - 41787402
Alignment:
| Q |
224 |
tctattcaacggaaattagttatatcaaatttatgagtttgtcaatcataacacacaaagattatttcattgctcaagctaaatcattacaaaggattta |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41788080 |
tctattcaacggaaattagttatatcaaatttatgagtttgtcaatcataacacacaaagattatttcattgctcaagctaaatcattacaaaggattta |
41787981 |
T |
|
| Q |
324 |
aaaatacatccttgttctaaaatcactactctagtttgcttagcaattaattaatacaagaaactgctagacttcactccttannnnnnn-aattatgta |
422 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41787980 |
aaaatacatccttgttctaaagtcactactctagtttgcttagcaattaat----acaagaaactgctagacttcactccttattttttttaattatgta |
41787885 |
T |
|
| Q |
423 |
tccctctgtcacgacttgggacaggagtaccgtgctacgcaaactcataatatatgtccatatnnnnnnncaacttaagggagaagcaaattacaaaata |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41787884 |
tccctctgtcacgacttgggacaggagtaccgtgctacgcaaactcataatatatgtccatataaaaaaacaacttaagggagaagcaaattacaaaata |
41787785 |
T |
|
| Q |
523 |
agatacatatttgtcacactgattgtgacataaaaaagattctctaatgcatattcatggatctaatttgttggcgtggagttccttttatggtttctta |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41787784 |
agatacatatttgtcacactgattgtgacatgaaaaagattctctaatgcatattcatggatctaatttgttggcgtggagttccttttatggtttctta |
41787685 |
T |
|
| Q |
623 |
ttcattttccttatttgtttactttatttcattagtttggtaaaaagcttagccaaaacaaaattatcatcatcatcaccatcattattattataattaa |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41787684 |
ttcattttccttatttgtttactttatttcattagtttggtaaaaagcttagccaaaacaaaattatcatcatcatcaccatcattattattataattaa |
41787585 |
T |
|
| Q |
723 |
taatgatgattaagattattaccgatgtcacatgtgtgtgtaaacataggactagttgcaaatgcatgtggctctacagtaacttcagtatgtccattct |
822 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41787584 |
taatgatgattaagattattaccgatgtcacatgtgtgtgtaaacataggactagttgcaaatgcatgtggctctacagtaacttcaatatgtccattct |
41787485 |
T |
|
| Q |
823 |
tgaggaagaatcatatcattctggacttctgttgctgcttttgttgactggtgattctcaagtgaaaacataccttccctatg |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41787484 |
tgaggaagaatcatatcattctggacttctgttgctgcttttgttgactggtgattctcaagtgaaaacataccttccctatg |
41787402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 41788247 - 41788149
Alignment:
| Q |
65 |
ttcgtcaaatggtgacttcttaatccattcatcccccattaagatctactcaacctgtttaggaacggcgctatggaaaccttctttccaagagcttag |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41788247 |
ttcgtcaaatggtgacttcttaatccattcatcccccctcaagatctcctcgacctgcttaggaacggcgctatggaaaccttctttccaagagcttag |
41788149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University