View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4033_high_29 (Length: 248)

Name: NF4033_high_29
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4033_high_29
NF4033_high_29
[»] chr5 (4 HSPs)
chr5 (1-116)||(3724468-3724581)
chr5 (192-232)||(40796079-40796119)
chr5 (128-174)||(16438506-16438552)
chr5 (128-171)||(40796049-40796092)
[»] chr7 (2 HSPs)
chr7 (128-174)||(11019877-11019923)
chr7 (192-232)||(11019907-11019947)
[»] chr8 (2 HSPs)
chr8 (133-174)||(10161393-10161434)
chr8 (192-232)||(10161418-10161458)
[»] chr1 (5 HSPs)
chr1 (128-174)||(15550442-15550488)
chr1 (128-174)||(27054295-27054341)
chr1 (128-174)||(46602824-46602870)
chr1 (192-232)||(15550472-15550512)
chr1 (192-232)||(27054325-27054365)
[»] chr6 (2 HSPs)
chr6 (136-174)||(5948411-5948449)
chr6 (191-229)||(28878843-28878881)
[»] chr4 (1 HSPs)
chr4 (128-174)||(20320221-20320267)
[»] chr2 (1 HSPs)
chr2 (192-232)||(30777216-30777256)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3724581 - 3724468
Alignment:
Q  1 tcatttaactcatcggtcctaaatgttgttgcacttgcactactagaaattgattaatcaagtaaatttagattagtatggttttctctaaatttttatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||    
T  3724581 tcatttaactcatcggtcctaaatgttgttgcacttgcactactagaaattgattaatcaagtaaatttagattagtatgg--ttctctaaattttaatc 3724484  T
Q  101 aggatatgaaacttgc 116  Q
    ||||||||||||||||    
T  3724483 aggatatgaaacttgc 3724468  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 40796119 - 40796079
Alignment:
Q  192 aaagtgggtcatttatgttattaattctcatatgaggtcaa 232  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  40796119 aaagtgggtcatttatgttattaattttcatatgaggtcaa 40796079  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 16438552 - 16438506
Alignment:
Q  128 ctgatcctgtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||    
T  16438552 ctgaccctgtttcctaaatcaattccatttttgaccccatatgagaa 16438506  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 40796049 - 40796092
Alignment:
Q  128 ctgatcctgtttcccaaatcaattccacttttgaccccatatga 171  Q
    |||| |||||||||||||| |||||||||||||||| |||||||    
T  40796049 ctgaccctgtttcccaaattaattccacttttgacctcatatga 40796092  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 11019877 - 11019923
Alignment:
Q  128 ctgatcctgtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  11019877 ctgaccctgtttcccaaatcaattccacttttgaccccatatgagaa 11019923  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 11019947 - 11019907
Alignment:
Q  192 aaagtgggtcatttatgttattaattctcatatgaggtcaa 232  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  11019947 aaagtgggtcatttatgtcattaattctcatatggggtcaa 11019907  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 10161393 - 10161434
Alignment:
Q  133 cctgtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10161393 cctgtttcccaaatcaattccacttttgaccccatatgagaa 10161434  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 10161458 - 10161418
Alignment:
Q  192 aaagtgggtcatttatgttattaattctcatatgaggtcaa 232  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  10161458 aaagtgggtcatttatgtcattaattctcatatggggtcaa 10161418  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 15550442 - 15550488
Alignment:
Q  128 ctgatcctgtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||    
T  15550442 ctgaccctgtttcccaaaacaattccatttttgaccccatatgagaa 15550488  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 27054295 - 27054341
Alignment:
Q  128 ctgatcctgtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||    
T  27054295 ctgaccctgattcccaaaacaattccacttttgaccccatatgagaa 27054341  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 46602870 - 46602824
Alignment:
Q  128 ctgatcctgtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||    
T  46602870 ctgaccctgtttctcaaatcaattccactttagaccccatatgagaa 46602824  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 15550512 - 15550472
Alignment:
Q  192 aaagtgggtcatttatgttattaattctcatatgaggtcaa 232  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  15550512 aaagtgggtcatttatgtcattaattctcatatggggtcaa 15550472  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 27054365 - 27054325
Alignment:
Q  192 aaagtgggtcatttatgttattaattctcatatgaggtcaa 232  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  27054365 aaagtgggtcatttttgtcattaattctcatatggggtcaa 27054325  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 5948411 - 5948449
Alignment:
Q  136 gtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  5948411 gtttcccaaaacaattccacttttgaccccatataagaa 5948449  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 28878881 - 28878843
Alignment:
Q  191 aaaagtgggtcatttatgttattaattctcatatgaggt 229  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  28878881 aaaagtggatcatttatgttaataattctcatatgaggt 28878843  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 20320221 - 20320267
Alignment:
Q  128 ctgatcctgtttcccaaatcaattccacttttgaccccatatgagaa 174  Q
    |||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  20320221 ctgaccctatttcccaaaacaactccacttttgaccccatatgagaa 20320267  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 30777256 - 30777216
Alignment:
Q  192 aaagtgggtcatttatgttattaattctcatatgaggtcaa 232  Q
    ||||||| |||||||||| ||||||||||||| ||||||||    
T  30777256 aaagtggatcatttatgtcattaattctcataggaggtcaa 30777216  T

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