View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4033_high_3 (Length: 888)

Name: NF4033_high_3
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4033_high_3
NF4033_high_3
[»] chr6 (5 HSPs)
chr6 (399-873)||(7558351-7558825)
chr6 (15-344)||(7557970-7558297)
chr6 (594-873)||(7562675-7562956)
chr6 (759-838)||(7567892-7567971)
chr6 (97-166)||(31559234-31559304)
[»] chr5 (4 HSPs)
chr5 (97-178)||(33818905-33818986)
chr5 (97-177)||(33737404-33737484)
chr5 (102-178)||(10473257-10473333)
chr5 (97-174)||(8462024-8462102)
[»] chr2 (3 HSPs)
chr2 (97-178)||(36401166-36401248)
chr2 (133-170)||(6406909-6406946)
chr2 (135-173)||(31467702-31467740)
[»] chr8 (1 HSPs)
chr8 (95-178)||(35809819-35809903)
[»] chr1 (1 HSPs)
chr1 (98-169)||(3771561-3771632)
[»] chr7 (2 HSPs)
chr7 (97-178)||(18310996-18311078)
chr7 (97-174)||(43380511-43380589)
[»] chr4 (1 HSPs)
chr4 (289-336)||(53913149-53913196)


Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 399 - 873
Target Start/End: Original strand, 7558351 - 7558825
Alignment:
Q  399 ttcaactatattactcttaattgtttcaaaataatcaaaatattaaatctataattttgtgaccatagaagtctactatcttaatcttatcgtattttat 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7558351 ttcaactatattactcttaattgtttcaaaataatcaaaatattaaatctataattttgtgaccatagaagtctactatcttaatcttatcgtattttat 7558450  T
Q  499 tgagtatgaaataatgtagtatgacatcctagaaactatgactctatcaataattaatatgcattctagaaagtcatatggctcaatatactattgtcat 598  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7558451 tgagtatgaaataatgtagtatgacatcctagaaactatgaccctgtcaataattaatatgcattctagaaagtcatatgactcaatatactattgtcat 7558550  T
Q  599 taacgtgttacacatgaaaacgaccatggccaataatttcttcgtttcattttcctttcaacaaactatataaatatgtctttaactcaagtcattctta 698  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| |||    
T  7558551 taacgtgttacacatgaaaacgaccatggcccataatttcttcgtttcattttcctttgaacaaaccatataaatatgtctttaattcaagtcattttta 7558650  T
Q  699 tttcacttccaacattattcacaactccttcattttcttgttccatcaaaaccatgacaaattttgagttcccaacaaatttttctaatgaactacccaa 798  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7558651 tttcacttccaacattattcacagctccttcattttcttgttccatcaaaaccatgacaaattttgagttcccaacaaatttttctaatgaactacccaa 7558750  T
Q  799 cgacgttgttttctgcggaaaagtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgt 873  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7558751 cgacattgttttctgcggaaaagtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgt 7558825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 7557970 - 7558297
Alignment:
Q  15 cagagactgaaactctagttgctgagtaaaaatcggtctctaatacgtttagag-cgcaaatagtgactaaaaaatccaccgttaaagtataaaatatta 113  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| || ||||| ||||||||||||||  ||||||||||||||||||||    
T  7557970 cagagactgaaactctagttgatgaataaaaattggtctctaatacgtttagagacgtaaataatgactaaaaaatccgtcgttaaagtataaaatatta 7558069  T
Q  114 aaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtccatccctcagacggaggaaatattagttatacattt 213  Q
    ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||    || | ||||||||||||||||||||||||||    
T  7558070 aaaatctttattttttcaactgctacttatttagccacacttaaaatatattcctagatccgtcc----ctgaaacggaggaaatattagttatacattt 7558165  T
Q  214 gattcttacaatatatatttttaaacggccaaa-gaattcaaataagttaaacctcaatgatggcacaagatatgcacaaaatagagagaaaaattacaa 312  Q
     ||||||  |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  7558166 tattcttttaatatatatttttaaacggccaaaagaattcaaataagttaaacctctatgatggcacaagatgtgcacaaaatagagagaaaaattacaa 7558265  T
Q  313 caagagtctaacatcaatcaacaacaaacctg 344  Q
    |||||||||||||||||||||||| |||||||    
T  7558266 caagagtctaacatcaatcaacaaaaaacctg 7558297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 594 - 873
Target Start/End: Original strand, 7562675 - 7562956
Alignment:
Q  594 gtcattaacgtgttacacatgaaaacgaccatggccaataatttcttcgtttcattttcctttcaacaaac--tatataaatatgtctttaactcaagtc 691  Q
    |||||| |||||||||| ||||   ||| ||||| | ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  7562675 gtcatttacgtgttacatatgacggcgagcatggtccataatttcttcgtttcattttccattcaacaaaccatatataaatatgtctttaactcaagtc 7562774  T
Q  692 attcttatttcacttccaacattattcacaactccttcattttcttgttccatcaaaaccatgacaaattttgagttcccaacaaatttttctaatgaac 791  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||     
T  7562775 attcttatttcacttccaactttattcacaactccttcattttcttgttccatcaaatccatgacaaattttgagttccccacaaatttttctaatgaat 7562874  T
Q  792 tacccaacgacgttgttttctgcggaaaagtcataacacgcaaaactgaaacacaagtaaacaaagacaacaccacggttgt 873  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7562875 taccaaacgacgttgttttctgcggaaaagtcataacacgcaaaactgaaccacaagcaaacaaagacaacaccacggttgt 7562956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 759 - 838
Target Start/End: Original strand, 7567892 - 7567971
Alignment:
Q  759 attttgagttcccaacaaatttttctaatgaactacccaacgacgttgttttctgcggaaaagtcataacacgcaaaact 838  Q
    ||||||| ||||||  || |||||||| ||||||||| || ||||||||||||||| |||||||||||||||| ||||||    
T  7567892 attttgaattcccagtaactttttctagtgaactaccaaatgacgttgttttctgcagaaaagtcataacacgtaaaact 7567971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 31559234 - 31559304
Alignment:
Q  97 taaagtataaaatattaaaaatc-tttattttttcgattgctacttatttagccacacttgaaatatattc 166  Q
    |||||||||||||||||||||||  | ||| ||||  |||||||||||||| |||||||| |||| |||||    
T  31559234 taaagtataaaatattaaaaatcgatcattatttcagttgctacttatttaaccacacttaaaatgtattc 31559304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 33818986 - 33818905
Alignment:
Q  97 taaagtataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 178  Q
    |||||||||||||||||||||||  | |||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||    
T  33818986 taaagtataaaatattaaaaatcagtgttttttcggttgcttcttatttagccacacttgaaatgtattcctagattcgtcc 33818905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 33737404 - 33737484
Alignment:
Q  97 taaagtataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtc 177  Q
    |||||||||||||||||||||||  |  || |||||||||||||||||| ||||||||| |||| ||| ||||||||||||    
T  33737404 taaagtataaaatattaaaaatcgatcattcttcgattgctacttattttgccacacttaaaatgtatgcctagatccgtc 33737484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 10473257 - 10473333
Alignment:
Q  102 tataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 178  Q
    |||||||||||||||||   | |||||| | ||||||||||||||||||||||| |||| ||||| |||||||||||    
T  10473257 tataaaatattaaaaattaatctttttttggttgctacttatttagccacacttaaaatgtattcatagatccgtcc 10473333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 8462102 - 8462024
Alignment:
Q  97 taaagtataaaatattaaaaatcttt-attttttcgattgctacttatttagccacacttgaaatatattcctagatcc 174  Q
    |||||||||||||||||||||||  | ||| ||||  |||||||||||||| ||||||||||||| ||||  |||||||    
T  8462102 taaagtataaaatattaaaaatcgatcattatttcagttgctacttatttacccacacttgaaatgtatttatagatcc 8462024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 36401248 - 36401166
Alignment:
Q  97 taaagtataaaatattaaaaatcttt-attttttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 178  Q
    |||||||||||||||||||||||  | ||| ||||  || ||||||||||||||||||||||||| ||||| |||||||||||    
T  36401248 taaagtataaaatattaaaaatcaatcattgtttcagttcctacttatttagccacacttgaaatgtattcttagatccgtcc 36401166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 6406946 - 6406909
Alignment:
Q  133 ttgctacttatttagccacacttgaaatatattcctag 170  Q
    |||||||||||||||||||||||||||| |||||||||    
T  6406946 ttgctacttatttagccacacttgaaatgtattcctag 6406909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 31467702 - 31467740
Alignment:
Q  135 gctacttatttagccacacttgaaatatattcctagatc 173  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  31467702 gctacttatttagccacacttgaaatgtatttctagatc 31467740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 35809903 - 35809819
Alignment:
Q  95 gttaaagtataaaatattaaaaatctttattt-tttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 178  Q
    |||||||||||||||||||||||||  |  || ||| |||| ||| |||||||||||||||||||||  ||||||||||||||||    
T  35809903 gttaaagtataaaatattaaaaatcgatcgttattttgatttctatttatttagccacacttgaaatgcattcctagatccgtcc 35809819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 3771632 - 3771561
Alignment:
Q  98 aaagtataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattccta 169  Q
    |||||||||||||||||||    | ||| ||| ||||||||||||||||||||||| |||||| ||||||||    
T  3771632 aaagtataaaatattaaaatcaatcattattttgattgctacttatttagccacacctgaaatgtattccta 3771561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 18310996 - 18311078
Alignment:
Q  97 taaagtataaaatattaaaaatctttattt-tttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 178  Q
    |||| ||||||||||||||||||  || || ||||| |  |||||||||||||||||||| |||| |||||||| ||||||||    
T  18310996 taaaatataaaatattaaaaatcgataattatttcggtaactacttatttagccacacttaaaatgtattcctaaatccgtcc 18311078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 43380589 - 43380511
Alignment:
Q  97 taaagtataaaatattaaaaatcttt-attttttcgattgctacttatttagccacacttgaaatatattcctagatcc 174  Q
    ||||||||||||||||||| |||  | ||| ||||  ||||||||||||||| || ||||||||| |||||||||||||    
T  43380589 taaagtataaaatattaaagatcgatcattatttcagttgctacttatttagtcatacttgaaatgtattcctagatcc 43380511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 53913196 - 53913149
Alignment:
Q  289 acaaaatagagagaaaaattacaacaagagtctaacatcaatcaacaa 336  Q
    |||| |||||||| ||||||||||||||||||||| || |||||||||    
T  53913196 acaatatagagaggaaaattacaacaagagtctaatatgaatcaacaa 53913149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University