View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_high_37 (Length: 208)
Name: NF4033_high_37
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 21348025 - 21348177
Alignment:
| Q |
6 |
gacatcatcatcattcttttttaggggaaatagaaataatacatgagcaattttacccagaaacataaggatctgatattctagatatgactctcgtgga |
105 |
Q |
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| T |
21348025 |
gacataatcatcattcttttttaggggaaatagaaataatacatgagcaattttacccagaaacataaggatctgatactctagatatgagtctcatgga |
21348124 |
T |
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| Q |
106 |
taatgatacttgtaaatcaccccnnnnnnntacatatagaaataaaattttac |
158 |
Q |
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| T |
21348125 |
taatgatacttgtaaatcaccccaaaaaaatacatatagaaataaaatattac |
21348177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 50724647 - 50724495
Alignment:
| Q |
6 |
gacatcatcatcattcttttttaggggaaatagaaataatacatgagcaattttacccagaaacataaggatctgatattctagatatgactctcgtgga |
105 |
Q |
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| T |
50724647 |
gacataatcatcatttttttttaggggaaatcgaaataatacatgagcaattttacccagaaatataaggatttgatactctggatatgattctcatggg |
50724548 |
T |
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| Q |
106 |
taatgatacttgtaaatcaccccnnnnnnntacatatagaaataaaattttac |
158 |
Q |
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| T |
50724547 |
taatgatacttgtaaatcaccccaaaaaaacacatatagaaataaaattttac |
50724495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 50788203 - 50788354
Alignment:
| Q |
6 |
gacatcatcatcattcttttttaggggaaatagaaataatacatgagcaattttacccagaaacataaggatctgatattctagatatgactctcgtgga |
105 |
Q |
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| T |
50788203 |
gacataatcatcatttttttttaggggaaatcgaaataatacatgagcaattttacccagaaatataaggatttgatactctggatatgattctcatggg |
50788302 |
T |
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| Q |
106 |
taatgatacttgtaaatcaccccnnnnnnntacatatagaaataaaattttac |
158 |
Q |
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| T |
50788303 |
taatgatacttgtaaatcaccccaaaaaac-acatatagaaataaaattttac |
50788354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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