View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_high_6 (Length: 526)
Name: NF4033_high_6
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 41787899 - 41787402
Alignment:
| Q |
19 |
ttttttaattatgtatccctctgtcacgacttgggacaggagtaccgtgctacgcaaactcataatatatgtccatatnnnnnnncaacttaagggagaa |
118 |
Q |
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| T |
41787899 |
ttttttaattatgtatccctctgtcacgacttgggacaggagtaccgtgctacgcaaactcataatatatgtccatataaaaaaacaacttaagggagaa |
41787800 |
T |
|
| Q |
119 |
gcaaattacaaaataagatacatatttgtcacactgattgtgacataaaaaagattctctaatgcatattcatggatctaatttgttggcgtggagttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787799 |
gcaaattacaaaataagatacatatttgtcacactgattgtgacatgaaaaagattctctaatgcatattcatggatctaatttgttggcgtggagttcc |
41787700 |
T |
|
| Q |
219 |
ttttatggtttcttattcattttccttatttgtttactttatttcattagtttggtaaaaagcttagccaaaacaaaattatcatcatcatcaccatcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787699 |
ttttatggtttcttattcattttccttatttgtttactttatttcattagtttggtaaaaagcttagccaaaacaaaattatcatcatcatcaccatcat |
41787600 |
T |
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| Q |
319 |
tattattataattaataatgatgattaagattattaccgatgtcacatgtgtgtgtaaacataggactagttgcaaatgcatgtggctctacagtaactt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787599 |
tattattataattaataatgatgattaagattattaccgatgtcacatgtgtgtgtaaacataggactagttgcaaatgcatgtggctctacagtaactt |
41787500 |
T |
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| Q |
419 |
cagtatgtccattcttgaggaagaatcatatcattctggacttctgttgctgcttttgttgactggtgattctcaagtgaaaacataccttccctatg |
516 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787499 |
caatatgtccattcttgaggaagaatcatatcattctggacttctgttgctgcttttgttgactggtgattctcaagtgaaaacataccttccctatg |
41787402 |
T |
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