View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_11 (Length: 451)
Name: NF4033_low_11
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 32266311 - 32266026
Alignment:
| Q |
15 |
gtaacaactatatttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcaagaaagaaagcaaactctgaaggatttt-ct |
113 |
Q |
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| T |
32266311 |
gtaacaactatatttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcgagaaagaaagcaaactctgaaggatttttct |
32266212 |
T |
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| Q |
114 |
tttagcaacaaaaatgaagaaatctatgagaatggtagcaaatgtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaa |
213 |
Q |
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| T |
32266211 |
tttagcaacaaaaataaagaaatctatgagaatggtagcaaaagtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaa |
32266112 |
T |
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| Q |
214 |
caacagatgttgagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
299 |
Q |
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| T |
32266111 |
caacagatgttgagagtgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
32266026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 32265956 - 32265888
Alignment:
| Q |
369 |
tatgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacat |
437 |
Q |
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| T |
32265956 |
tatgaatgtccaatttgctacaaaattttcaggtcaggacaagcattaggaggacataaaagatcacat |
32265888 |
T |
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