View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_15 (Length: 433)
Name: NF4033_low_15
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 196 - 421
Target Start/End: Complemental strand, 42325322 - 42325094
Alignment:
| Q |
196 |
tatttatatgcagggttcagagttcaat---cttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
292 |
Q |
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| T |
42325322 |
tatttatatgcagggttcagagttcaatattcttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
42325223 |
T |
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| Q |
293 |
tctctcacaacatcaaacatccctctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
392 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325222 |
tctctcacaacatcaaacatccatctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
42325123 |
T |
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| Q |
393 |
tatacatatttggttggtgtaggtgatga |
421 |
Q |
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| T |
42325122 |
tatacatatttggttggtgtaggtgatga |
42325094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 42325518 - 42325363
Alignment:
| Q |
19 |
caatggccatgagtttttcccttccactatcaacaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325518 |
caatggccatgagtttttcccttccactatcaacaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatat |
42325419 |
T |
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| Q |
119 |
tttttgttgttttctattatcagacatactcacacaaacacgctatgtgtctgtcc |
174 |
Q |
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| T |
42325418 |
tttttgttgttttctattatcagacatactcacacaaacacgctatgtgtctgtcc |
42325363 |
T |
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