View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4033_low_18 (Length: 398)

Name: NF4033_low_18
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4033_low_18
NF4033_low_18
[»] chr7 (8 HSPs)
chr7 (15-385)||(6094768-6095138)
chr7 (74-273)||(6089442-6089641)
chr7 (66-138)||(6180990-6181062)
chr7 (73-137)||(6208580-6208644)
chr7 (66-138)||(6213424-6213496)
chr7 (66-154)||(6237872-6237960)
chr7 (66-267)||(6247811-6248012)
chr7 (74-137)||(6106613-6106676)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 6094768 - 6095138
Alignment:
Q  15 agttttgataagctgaaattggaagaaacgttgatcaaaaacacattgtcgaaagttcctttccttttgacttcattctccacaagagttgcaagtaaag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6094768 agttttgataagctgaaattggaagaaacgttgatcaaaaacacattgtcgaaagttcctttcctttttacttcattctccacaagagttgcaagtaaag 6094867  T
Q  115 tttttcccactcctcccattccatggataccaataacaaatacatcgtcttcctctagaagtctcaacacttggtcgatatttatgtataatgtttctcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094868 tttttcccactcctcccattccatggataccaataacaaatacatcgtcttcctctagaagtctcaacacttggtcgatatttatgtataatgtttctcc 6094967  T
Q  215 aacaaattcagttgacaaaatgagaggcttttctttcttgtgtagtttcatatctttgatcaatttatttacctcaatgtcatttaaattattcatatca 314  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094968 aacaaattcagtcgacaaaatgagaggcttttctttcttgtgtcgtttcatatctttgatcaatttatttacctcaatgtcatttaaattattcatatca 6095067  T
Q  315 tccacacattctttcaattcttgcatttgctccagccattcatcagcttttggtttgcgttttatgcccct 385  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  6095068 tccacacattctttcaattcttgcatttcctccagccattcatcaacttttggtttgcgttttatgcccct 6095138  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 74 - 273
Target Start/End: Original strand, 6089442 - 6089641
Alignment:
Q  74 tttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaatacatcgtcttcctctaga 173  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||| || | ||| |||||||||    
T  6089442 tttcctttttacttcattctcgacgagagttgcaagtaaagtttttcccactccccccattccatatataccaataacaaaaacttggtcatcctctaga 6089541  T
Q  174 agtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagttgacaaaatgagaggcttttctttcttgtgtagtttcatatctttga 273  Q
    ||| | | |||||    |||||| | || ||||| ||  ||||||||||| || |||||| ||||||| ||||||| ||||||| |||||||||||||||    
T  6089542 agtttaagcactttcctgatattaaagtctaatgctttcccaacaaattctgtcgacaaagtgagaggtttttcttccttgtgtcgtttcatatctttga 6089641  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 6180990 - 6181062
Alignment:
Q  66 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccat 138  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  6180990 aaagttgctttcctttttacttcattctccacgagagttgcaagtaaagtttttcctactcctcccattccat 6181062  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 6208580 - 6208644
Alignment:
Q  73 ctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattcca 137  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6208580 ctttcctttttacttcattctccacaagagttgcaagtaaagtttttccgactcctcccattcca 6208644  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 6213424 - 6213496
Alignment:
Q  66 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccat 138  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  6213424 aaagttgctttcctttttacttcattttccacgagagttgcaagtaaagtttttcccactcctcccattccat 6213496  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 6237872 - 6237960
Alignment:
Q  66 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaa 154  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||   || |||||||||||    
T  6237872 aaagttgctttcctttttacttcattctccacgagagttgcaagtaaagtttttccgactcctcccattccacatatgccaataacaaa 6237960  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 267
Target Start/End: Original strand, 6247811 - 6248012
Alignment:
Q  66 aaagttcctttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccatggataccaataacaaatacatcgtctt 165  Q
    |||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||  || ||||| ||||| || |  || |    
T  6247811 aaagttgctttcctttttacttcattctccacgagagttgcatgtaaagtttttcctactcctcccattccatatatgccaatgacaaagactttatcat 6247910  T
Q  166 cctctagaagtctcaacacttggtcgatatttatgtataatgtttctccaacaaattcagttgacaaaatgagaggcttttctttcttgtgtagtttcat 265  Q
    | || ||  || |||||||||  | ||| |||   | |||| |  | || |||||||||||||||||| ||| |||||| | |||||||||| |||||||    
T  6247911 cgtcaagttgtttcaacactttatggattttttcatctaatctccccccgacaaattcagttgacaaagtgaaaggcttctttttcttgtgtcgtttcat 6248010  T
Q  266 at 267  Q
    ||    
T  6248011 at 6248012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 6106613 - 6106676
Alignment:
Q  74 tttccttttgacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattcca 137  Q
    |||||||||  |||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  6106613 tttcctttttccttccttctccacgagagttgcaagtaaagtttttcccacacctcccattcca 6106676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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