View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_19 (Length: 383)
Name: NF4033_low_19
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_19 |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 23135694 - 23135321
Alignment:
| Q |
11 |
catcatcatacttctggttctcacataatgtgaagctaatacatgcgctaatgaaaatctaagatacgaaagtttgtaagaannnnnnn-aagtgtttgt |
109 |
Q |
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| T |
23135694 |
catcatcatacttctggttctcacataatgtgaagctaatacatgcgctaatgaaaatctaagatacgaaagtttataagaattttttttaagtgtttgt |
23135595 |
T |
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| Q |
110 |
gcgctatataatttgacaaaactttgtcatttgtaaaattacatgaagtctcatgagttcttcaaactgcttaggttcttaaatagaagagnnnnnnnga |
209 |
Q |
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| T |
23135594 |
gcgctatataatttgacaaaactttgtcatttgtaaaattacatgaagtttcatgagttcttcaaactgcttaggttcttaaatagaagagaataaaaga |
23135495 |
T |
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| Q |
210 |
tatattgtttgaagaggtgtcaacgcataaaa-tatctttgagaaactttgttcaagtttgaaatattttgcctctaatggataattccattaaatagta |
308 |
Q |
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| T |
23135494 |
tatattatttgaagaggtgtcaacgcataaaaatgtttttgagaaactttgttcaagtttgaaatattttgcctctaatggataattccattaaatagta |
23135395 |
T |
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| Q |
309 |
ctagagcgaccatttacttctttgagaatgaccccttgcattctctttgcttttgaacaactttgtttctgcac |
382 |
Q |
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| T |
23135394 |
ctagaatgatcatttacttctttgagaatgacccgttgcattctctttgcctttgaacaactttgtttctgcac |
23135321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 4891 - 4796
Alignment:
| Q |
244 |
tctttgagaaactttgttcaagtttgaaatattttgcctctaatggataattccattaaatagtactagagcgaccatttacttctttgagaatga |
339 |
Q |
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| T |
4891 |
tctttgagaaactttgattaggtttgaaatatttttcctctaatggataattttgttgaatagttctagagagattatttgcttctttgggaatga |
4796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 25621745 - 25621833
Alignment:
| Q |
244 |
tctttgagaaactttgttcaagtttgaaatattttgcctctaatggataattccattaaatagtactagagcgaccatttacttctttg |
332 |
Q |
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| T |
25621745 |
tctttgagaaactttcattaggtttgaaatatttttcctctaatggataatttcgttgaatagttctagagagattatttgcttctttg |
25621833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 25809117 - 25809205
Alignment:
| Q |
244 |
tctttgagaaactttgttcaagtttgaaatattttgcctctaatggataattccattaaatagtactagagcgaccatttacttctttg |
332 |
Q |
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| T |
25809117 |
tctttgggaaactttgattaggtttgaaatatttttcctctaatggataatttcgttgaatagttctagagagattatttgcttctttg |
25809205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 33546129 - 33546228
Alignment:
| Q |
214 |
ttgtttgaagaggtgtcaacgcataaaatatctttgagaaactttgttcaagtttgaaatattttgcctctaatggataattccattaaatagtactaga |
313 |
Q |
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| T |
33546129 |
ttgtttgaagaagtgtcaacacataaatcttccttgagaagctttgatcaggtttgaaag-ttttgtctctaatggataattcaattgaatagtaataga |
33546227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 378
Target Start/End: Complemental strand, 1185922 - 1185826
Alignment:
| Q |
282 |
tctaatggataattccattaaatagtactagagcgaccatttacttctttgagaatgaccccttgcattctctttgcttttgaacaactttgtttct |
378 |
Q |
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| T |
1185922 |
tctaatggataatttcattgaatagtattagaggtttcattttcttctttgagaatgatccgttgtattctctttgtctttcaaaaactttgtttct |
1185826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 17088809 - 17088769
Alignment:
| Q |
218 |
ttgaagaggtgtcaacgcataaaatatctttgagaaacttt |
258 |
Q |
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| T |
17088809 |
ttgaagaggtgtcaacgcattaataatctttgagaaacttt |
17088769 |
T |
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