View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_20 (Length: 370)
Name: NF4033_low_20
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 26356208 - 26356532
Alignment:
| Q |
30 |
ggaaatttacaaagtgcagaatcttatgtacatgtgaaaacaatgcttggaggaaccttcacagatattgccatgtggatattttacccttttaatggac |
129 |
Q |
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| T |
26356208 |
ggaaatttacaaagtgcagaatcttatgtacatgtgaaaccaatgcttggaggaaccttcacagatattgccatgtggattttttacccttttaatggac |
26356307 |
T |
|
| Q |
130 |
caggaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttgga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26356308 |
caggaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttgga |
26356407 |
T |
|
| Q |
230 |
tggtaaattatggcatgtatatttctcacaacatagtaaaggtgaatggattgattcttctcagcttgagtttcaaacaaatagacctgttttttattct |
329 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26356408 |
tggtaaattatggcatttatatttctcacaacatagtaaaggtgaatggattgattcttctcagcttgagtttcaatcaaatagacctgttttttattct |
26356507 |
T |
|
| Q |
330 |
tcattgcatggtcatgcatcatatc |
354 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
26356508 |
tcattgcatggtcatgcatcatatc |
26356532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 26348213 - 26347949
Alignment:
| Q |
37 |
tacaaagtgcagaatcttatgtacatgtgaaaacaatgcttggaggaaccttcacagatattgccatgtggatattttacccttttaatggaccaggaag |
136 |
Q |
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| T |
26348213 |
tacaaagtgcagaatcatacgtacatgtgaaaccaatgtatggaggaacattcactgatattgccatgtgggttttttacccttttaatggacctgggag |
26348114 |
T |
|
| Q |
137 |
agcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaa |
236 |
Q |
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|||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
26348113 |
agcaaaagtggagttcttaaatgtgaaattagggaaaataggtgaacatgttggtgattgggagcacgtgacattaagggtaagtaatttggatggtcaa |
26348014 |
T |
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| Q |
237 |
ttatggcatgtatatttctcacaacatagtaaaggtgaatggattgattcttctcagcttgagtt |
301 |
Q |
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|||||||||||||||||||||||||||| | ||| |||||||||||| || || |||||||| |
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| T |
26348013 |
ttatggcatgtatatttctcacaacataatcttggttcatggattgattcatcccaacttgagtt |
26347949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 306
Target Start/End: Complemental strand, 26332980 - 26332711
Alignment:
| Q |
37 |
tacaaagtgcagaatcttatgtacatgtgaaaacaatgcttggaggaaccttcacagatattgccatgtggatattttacccttttaatggaccaggaag |
136 |
Q |
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|||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||| | ||||||||||| |||||||| | || |
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| T |
26332980 |
tacaaagtgcagaatcatatgtacatgtgaaaccaatgtatggaggaacattcactgatattgccatgtgggttttttaccctttcaatggacctgcaaa |
26332881 |
T |
|
| Q |
137 |
agcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaa |
236 |
Q |
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||| ||| | |||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
26332880 |
agctaaaataaagtttataaatgttaaattgggaaaagtaggtgaacatgttggtgattgggagcatgtgacattaagggtaagtaacttggatggtcag |
26332781 |
T |
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| Q |
237 |
ttatggcatgtatatttctcacaacatagtaaaggtgaatggattgattcttctcagcttgagtttcaaa |
306 |
Q |
| |
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||||||||||| |||||||| ||||||| | ||| |||| ||||| | ||||| ||||||||||||| |
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| T |
26332780 |
ttatggcatgtctatttctctcaacataatggtggttcatgggttgatgcatctcaacttgagtttcaaa |
26332711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 37 - 306
Target Start/End: Complemental strand, 26338301 - 26338032
Alignment:
| Q |
37 |
tacaaagtgcagaatcttatgtacatgtgaaaacaatgcttggaggaaccttcacagatattgccatgtggatattttacccttttaatggaccaggaag |
136 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||| | ||||| ||||| |||||| | ||||| |
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| T |
26338301 |
tacaaagtgcagaatcatatgtacatgtgaaaccaatgtatggaggaacattcactgatattgccatgtgggttttttatcctttcaatggagctggaag |
26338202 |
T |
|
| Q |
137 |
agcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaa |
236 |
Q |
| |
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||| ||||| |||||||| || ||||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| || |
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| T |
26338201 |
agctaaagtagagtttatagatattaaattgggaaaagcaggtgaacatgttggtgattgggagcatgtgacattaagggtaagtaacttcgatggtcaa |
26338102 |
T |
|
| Q |
237 |
ttatggcatgtatatttctcacaacatagtaaaggtgaatggattgattcttctcagcttgagtttcaaa |
306 |
Q |
| |
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|||||||||||||| ||||| ||||| | | ||| ||||||||||||| ||||| |||||||| |||| |
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| T |
26338101 |
ttatggcatgtatacttctctcaacacaatgctggtaaatggattgattcatctcaacttgagttccaaa |
26338032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 28315338 - 28315286
Alignment:
| Q |
174 |
ataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaattt |
226 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
28315338 |
ataggtgaacatattggtgattgggagcatgtaactttaagggtaagtaattt |
28315286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 348
Target Start/End: Complemental strand, 26324912 - 26324737
Alignment:
| Q |
176 |
aggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgtatatttctcacaacatagtaaaggtgaa |
275 |
Q |
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|||||||||| | || || |||||||||||||||||||||||||| || || ||| |||||||| || ||||| ||||||||||| || ||| || |
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| T |
26324912 |
aggtgaacatgtgggagactgggagcatgtgacattaagggtaagcaactttagtggagaattatggatggtttatttatcacaacatagcaagggtcaa |
26324813 |
T |
|
| Q |
276 |
tggattgattcttctcagcttgagtttcaaa---caaatagacctgttttttattcttcattgcatggtcatgcat |
348 |
Q |
| |
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||| ||||| | | | | ||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
26324812 |
tgggttgatgcatgtgaccttgagtttaaaaatggtaataggcctgtgctttattcttcattgcatggtcatgcat |
26324737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 26347930 - 26347881
Alignment:
| Q |
305 |
aacaaatagacctgttttttattcttcattgcatggtcatgcatcatatc |
354 |
Q |
| |
|
|||||| ||||||||| | ||| ||||||||||||||||||||||||||| |
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|
| T |
26347930 |
aacaaaaagacctgttgtctatgcttcattgcatggtcatgcatcatatc |
26347881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 26338016 - 26337957
Alignment:
| Q |
295 |
ttgagtttcaaacaaatagacctgttttttattcttcattgcatggtcatgcatcatatc |
354 |
Q |
| |
|
|||| |||| |||||| |||||| || ||||| |||| |||||||||||||||||||||| |
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|
| T |
26338016 |
ttgattttccaacaaaaagacctattgtttatgcttctttgcatggtcatgcatcatatc |
26337957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 33 - 298
Target Start/End: Original strand, 54949274 - 54949539
Alignment:
| Q |
33 |
aatttacaaagtgcagaatcttatgtacatgtgaaaacaatgcttggaggaaccttcacagatattgccatgtggatattttacccttttaatggaccag |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||| |||| ||||||| ||||||||||| |||||||| | |
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| T |
54949274 |
aatttacaaagtgcggaatcttatgtacatgtgaagccaatgtttggaggaaccttcactgattttgcaatgtggactttttaccctttcaatggacctg |
54949373 |
T |
|
| Q |
133 |
gaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatgg |
232 |
Q |
| |
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|||| |||| | |||||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54949374 |
gaaggttaaaaatagggtttataaatattaaattagagagaataggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatgg |
54949473 |
T |
|
| Q |
233 |
taaattatggcatgtatatttctcacaacatagtaaaggtgaatggattgattcttctcagcttga |
298 |
Q |
| |
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|||||||||| | || ||||||||||| |||| | |||| |||| ||||||| ||||| ||||| |
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|
| T |
54949474 |
taaattatggaaagtctatttctcacatcataagacaggttcatgggttgattcctctcaacttga |
54949539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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