View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_23 (Length: 332)
Name: NF4033_low_23
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 38079219 - 38079523
Alignment:
| Q |
18 |
aggtaaaccctgaggacattgtgtggggaggatgggatatcagtaacttgaacctagctgatgccatgggcagagctagggtatttgacatagacctaca |
117 |
Q |
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| T |
38079219 |
aggtaaaccctgaggatattgtgtggggaggatgggatatcagtaacttgaacctagctgatgccatgggcagagctagggtatttgacatagacctaca |
38079318 |
T |
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| Q |
118 |
aaaacaattaaggccttacatggaatccatggttccacttcctggaatctatgaccctgatttcattgctgctaatcaaggagatcgtgctaacaacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38079319 |
aaaacaattaaggccttacatggaatccatggttccacttcctggaatctatgaccctgatttcattgctgctaatcaaggagatcgtgctaacaacatc |
38079418 |
T |
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| Q |
218 |
attaaaggaacaaagaaagaacaacttcagcaagtcatcaaagacattaagtaaattaaatcaacaataaatataaatttaattaattctgtaccctatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38079419 |
attaaaggaacaaagaaagaacaacttcagcaagtcatcaaagacattaagtaaattaaatcaacaataaatataaatttaattaattctgtaccctatc |
38079518 |
T |
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| Q |
318 |
ctatg |
322 |
Q |
| |
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||||| |
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| T |
38079519 |
ctatg |
38079523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 39698767 - 39699020
Alignment:
| Q |
17 |
caggtaaaccctgaggacattgtgtggggaggatgggatatcagtaacttgaacctagctgatgccatgggcagagctagggtatttgacatagacctac |
116 |
Q |
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| T |
39698767 |
caggtcaaccccgatgacattgtttttggtggatgggatatcagtgacatgaaccttgctgatgccatggctagggccagggtttttgacattgatttgc |
39698866 |
T |
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| Q |
117 |
aaaaacaattaaggccttacatggaatccatggttccacttcctggaatctatgaccctgatttcattgctgctaatcaaggagatcgtgctaacaacat |
216 |
Q |
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|||| ||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| || ||| | |
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| T |
39698867 |
aaaagcaattgaggccttatatggaatccatggttccacttcccggtatctatgacccggatttcattgctgctaatcaaggagaacgtgcgaataacgt |
39698966 |
T |
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| Q |
217 |
cattaaaggaacaaagaaagaacaacttcagcaagtcatcaaagacattaagta |
270 |
Q |
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|| || || ||||||| ||||||| | | ||| ||||||||||||||||||| |
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| T |
39698967 |
tatcaagggtacaaagagagaacaaatcaaccaaatcatcaaagacattaagta |
39699020 |
T |
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