View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_28 (Length: 250)
Name: NF4033_low_28
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_28 |
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| [»] chr2 (5 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 26355760 - 26355999
Alignment:
| Q |
11 |
cacagaccaatgcgagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgtt |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||| |
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| T |
26355760 |
cacagaccaatgcgagtcttcttcgtggatctggggatcaaacgacttcaatttttatgatgttagaccgatcaatagaggaactcaagctcccggtgtt |
26355859 |
T |
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| Q |
111 |
cgtgtcggcacctttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatc |
210 |
Q |
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| T |
26355860 |
cacgttggcgcctttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattcaatttccaaaatcatgccaaatc |
26355959 |
T |
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| Q |
211 |
tactacaaattgatgcaatactcaaagtttactctccatt |
250 |
Q |
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| T |
26355960 |
tagtacaaattgatgcaatactcaaagtttactctccatt |
26355999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 26348668 - 26348429
Alignment:
| Q |
11 |
cacagaccaatgcgagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgtt |
110 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||| || ||||| |
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| T |
26348668 |
cacagaccaatgtgagtcttcttcgtggatttggggatcaaacaacttcaatttctacaatgttagaccaatcaatagaggaactcaagctcctggtgtt |
26348569 |
T |
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| Q |
111 |
cgtgtcggcacctttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatc |
210 |
Q |
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| T |
26348568 |
cgagtcggtaccttctttgctcaaaatggtgggaatactaaccctccatcaatttcatgtttgaagaatctcaattctatttcacaaatcatgcctaata |
26348469 |
T |
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| Q |
211 |
tactacaaattgatgcaatactcaaagtttactctccatt |
250 |
Q |
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| T |
26348468 |
aaaaacaaattgaggcaatgctccaagtttactctccatt |
26348429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 26333428 - 26333223
Alignment:
| Q |
18 |
caatgcgagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcg |
117 |
Q |
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||||| ||||||||| | ||||||||||||||||||||||| ||||| || || ||||||||||| |||||||| | | ||||| | ||||||| || | |
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| T |
26333428 |
caatgtgagtcttctacatggatttggggatcaaacgacttaaatttctacgacgttagaccaattaatagaggaagtaaagctcccggtgttcgcgttg |
26333329 |
T |
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| Q |
118 |
gcacctttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactaca |
217 |
Q |
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||||||| ||||| ||||||||||||| || || ||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||| | ||| |
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| T |
26333328 |
gcaccttcgttgctcaaaatggtgggaatactaaccctccatcaatttcgtgtttgaagaatctcaattctatttcacaaatcatgcctaatcaaacaca |
26333229 |
T |
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| Q |
218 |
aattga |
223 |
Q |
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|||||| |
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| T |
26333228 |
aattga |
26333223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 26338729 - 26338528
Alignment:
| Q |
38 |
gatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcggcacctttgttgcacaaaat |
137 |
Q |
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||||||||||||||||| ||| ||||| || |||||||||||||| |||||||| | | ||||| ||||||| || ||||| || ||||| |||||| |
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| T |
26338729 |
gatttggggatcaaacggcttaaatttctacgatgttagaccaattaatagaggaattaaagctctcggtgttcgagttggcacattcgttgctcaaaat |
26338630 |
T |
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| Q |
138 |
ggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactacaaattgatgcaatactcaaag |
237 |
Q |
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||||||| || || ||| ||||| |||||||||||||| ||| | |||||||| || |||||||||||| | | ||||||||||||| ||||| ||| |
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| T |
26338629 |
ggtgggaatattaacccgccatcaatttcatgtttgaagaatattgattctattacacaaatcatgcctagtaaaaaacaaattgatgcactactccaag |
26338530 |
T |
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| Q |
238 |
tt |
239 |
Q |
| |
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|| |
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| T |
26338529 |
tt |
26338528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 28315893 - 28315839
Alignment:
| Q |
57 |
ttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttc |
111 |
Q |
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|||||| || || |||||||||||||||||||||||| | ||||| ||||||||| |
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| T |
28315893 |
ttcaatgttcattatgttagaccaatcaatagaggtattgaagctcctagtgttc |
28315839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 54948825 - 54949056
Alignment:
| Q |
19 |
aatgcgagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcgg |
118 |
Q |
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||||||| ||||||||| |||||||| ||| | ||||||||||| ||||| ||||||||||| | |||||| ||||||||| | ||| ||| || |
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| T |
54948825 |
aatgcgaaacttcttcgttgatttgggaatccgaagacttcaatttctatgacgttagaccaataagtagaggaactcaagctcgaggcattcatgtagg |
54948924 |
T |
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| Q |
119 |
cacctttgttgcacaaaatggtgggactaatatccctccatctatttcatgtttgaaaaatctcaattctatttcaaaaatcatgcctaatctactacaa |
218 |
Q |
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||| |||||||||||||||||| | || || ||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||| |||| |
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| T |
54948925 |
cacttttgttgcacaaaatggtagacttactaaccctccatctatttcatgtttgaaaaaccttaattccatttcaaagatcatgcctaatctacaacaa |
54949024 |
T |
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| Q |
219 |
attgatgcaatactcaaagtttactctccatt |
250 |
Q |
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||| | |||||||||||||||||||||||||| |
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| T |
54949025 |
attaaagcaatactcaaagtttactctccatt |
54949056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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