View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4033_low_31 (Length: 235)

Name: NF4033_low_31
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4033_low_31
NF4033_low_31
[»] chr7 (5 HSPs)
chr7 (1-221)||(23134906-23135126)
chr7 (174-221)||(32561871-32561918)
chr7 (174-221)||(32562244-32562291)
chr7 (19-113)||(19650613-19650707)
chr7 (141-221)||(5459041-5459121)
[»] chr8 (6 HSPs)
chr8 (139-221)||(22881732-22881814)
chr8 (157-221)||(19342157-19342221)
chr8 (157-221)||(19371655-19371719)
chr8 (142-208)||(15748416-15748482)
chr8 (142-208)||(15753126-15753192)
chr8 (160-209)||(10516426-10516475)
[»] chr2 (4 HSPs)
chr2 (139-209)||(16748066-16748136)
chr2 (175-221)||(34566087-34566133)
chr2 (175-211)||(18062065-18062101)
chr2 (157-209)||(24386388-24386440)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-114)||(4426-4539)
[»] chr3 (2 HSPs)
chr3 (143-221)||(23528345-23528423)
chr3 (142-209)||(2120116-2120183)
[»] chr5 (3 HSPs)
chr5 (157-209)||(11848274-11848326)
chr5 (157-209)||(24558967-24559019)
chr5 (157-209)||(24599999-24600051)
[»] chr4 (4 HSPs)
chr4 (137-208)||(12285776-12285847)
chr4 (139-209)||(24715661-24715731)
chr4 (139-211)||(35150112-35150184)
chr4 (175-221)||(9597349-9597395)
[»] chr6 (1 HSPs)
chr6 (175-209)||(14761333-14761367)
[»] chr1 (2 HSPs)
chr1 (144-209)||(36754885-36754950)
chr1 (157-209)||(20816902-20816954)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23135126 - 23134906
Alignment:
Q  1 ttctttagaacatgttctaagtcttaagagcttctcttaagtaccaaaatgctttcctttacgattagagtttgatatttcagaatcaataacttggcta 100  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||     
T  23135126 ttctttagaacatgttctaagtcttcagaacttctcttgagtaccaaaatgctttcctttacgtttagagtttgatatttcataatcaataacttgactg 23135027  T
Q  101 tgaagttagaatttcattctatatatggtatatttgaaacacattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattg 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  23135026 tgaagttagaatttcattctatatatggtacatttgaaacacattggagtacacacttgttctttcatacaacgttatcatcaaaatcttagagatattg 23134927  T
Q  201 ttctaaaactcgccttggttc 221  Q
    || |||||||| |||||||||    
T  23134926 ttataaaactcaccttggttc 23134906  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 32561918 - 32561871
Alignment:
Q  174 attatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||||    
T  32561918 attatcatcaaaaccttagagacattgttctaaaactggcgttggttc 32561871  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 32562291 - 32562244
Alignment:
Q  174 attatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||||    
T  32562291 attatcatcaaaaccttagagacattgttctaaaactggcgttggttc 32562244  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 19650613 - 19650707
Alignment:
Q  19 aagtcttaagagcttctcttaagtaccaaaatgctttcctttacgattagagtttgatatttcagaatcaataacttggctatgaagttagaatt 113  Q
    ||||||| | |||||||||| |||||||||||| ||||||||  | | |||| ||||||| | |||| ||| ||||||  | |||||||||||||    
T  19650613 aagtcttcatagcttctcttgagtaccaaaatgttttcctttgtgttcagagcttgatatattagaaccaaaaacttgaatctgaagttagaatt 19650707  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 5459121 - 5459041
Alignment:
Q  141 acattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    |||||||||||| || ||| |||||| ||||  |||||||||||||  ||||||| | | ||||||||||| | |||||||    
T  5459121 acattagagtacccaattgctctttcgtacattattatcatcaaaacattagagaaactattctaaaactcactttggttc 5459041  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 22881732 - 22881814
Alignment:
Q  139 acacattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    |||||||||||||  || ||||||||||||| |  ||||||||||||| |||||||||||||||||||||||| | |||||||    
T  22881732 acacattagagtatccaattgttctttcatatattattatcatcaaaaccttagagacattgttctaaaactcactttggttc 22881814  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 19342221 - 19342157
Alignment:
Q  157 ttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    |||||||||||||||   ||||||||||||  ||||||||||||||||||||||| | |||||||    
T  19342221 ttgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggttc 19342157  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 19371719 - 19371655
Alignment:
Q  157 ttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    |||||||||||||||   ||||||||||||  ||||||||||||||||||||||| | |||||||    
T  19371719 ttgttctttcatacattgttatcatcaaaactttagagacattgttctaaaactcactttggttc 19371655  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 15748416 - 15748482
Alignment:
Q  142 cattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaa 208  Q
    ||||||||||  || |||||||||||||||   ||||||| |||||||||||||| |||||||||||    
T  15748416 cattagagtaggcaattgttctttcatacattgttatcataaaaatcttagagactttgttctaaaa 15748482  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 15753126 - 15753192
Alignment:
Q  142 cattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaa 208  Q
    ||||| ||||| || |||||||| ||||||   ||||||| |||||||||||||| |||||||||||    
T  15753126 cattaaagtacccaattgttcttacatacattgttatcataaaaatcttagagactttgttctaaaa 15753192  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 10516475 - 10516426
Alignment:
Q  160 ttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    ||||||||||||   ||||||||||||||||| | |||||||||||||||    
T  10516475 ttctttcatacattgttatcatcaaaatcttataaacattgttctaaaac 10516426  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 16748136 - 16748066
Alignment:
Q  139 acacattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    |||||||||||||  ||  ||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  16748136 acacattagagtattcaactgttctttcatacattattatcatcaaaatcttagaaacattgttctaaaac 16748066  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 34566133 - 34566087
Alignment:
Q  175 ttatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||    
T  34566133 ttatcatcaaaatcttagagatattgttctaaaactcatcttggttc 34566087  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 18062101 - 18062065
Alignment:
Q  175 ttatcatcaaaatcttagagacattgttctaaaactc 211  Q
    |||||| |||||||||||||||||||| |||||||||    
T  18062101 ttatcaacaaaatcttagagacattgtactaaaactc 18062065  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 24386388 - 24386440
Alignment:
Q  157 ttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    |||||||||||||||  |||||||| |||| ||||| || |||||||||||||    
T  24386388 ttgttctttcatacattattatcataaaaaccttagggatattgttctaaaac 24386440  T

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Target: scaffold0466 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4539 - 4426
Alignment:
Q  1 ttctttagaacatgttctaagtcttaagagcttctcttaagtaccaaaatgctttcctttacgattagagtttgatatttcagaatcaataacttggcta 100  Q
    ||||| ||| ||| ||||||||||| ||||||||||||  |||||||||| ||||| |||    |||||| ||||| ||||| ||||||||| ||| |||    
T  4539 ttcttcagatcatcttctaagtcttcagagcttctcttgggtaccaaaatactttcatttttctttagagcttgatgtttcaaaatcaataagttgacta 4440  T
Q  101 tgaagttagaattt 114  Q
    |||| |||||||||    
T  4439 tgaatttagaattt 4426  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 23528423 - 23528345
Alignment:
Q  143 attagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    |||| ||||| || ||||||||||| |||   |||||||||||| |||||||||||||||||||||||| | |||||||    
T  23528423 attatagtacccaattgttctttcagacattgttatcatcaaaaccttagagacattgttctaaaactcactttggttc 23528345  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 2120183 - 2120116
Alignment:
Q  142 cattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    |||||||||||  | || ||||||||||||   ||||||| ||||||||||||||||||||| |||||    
T  2120183 cattagagtactaaattattctttcatacattgttatcataaaaatcttagagacattgttcaaaaac 2120116  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 11848326 - 11848274
Alignment:
Q  157 ttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||| ||||||    
T  11848326 ttgttctttcatacaatgttatcatcaaaaccttagagacattgttgtaaaac 11848274  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 24559019 - 24558967
Alignment:
Q  157 ttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    |||||||||||||||  ||||||||||||| |||| |||||||||||||||||    
T  24559019 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaac 24558967  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 24600051 - 24599999
Alignment:
Q  157 ttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    |||||||||||||||  ||||||||||||| |||| |||||||||||||||||    
T  24600051 ttgttctttcatacattattatcatcaaaaccttaaagacattgttctaaaac 24599999  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 12285847 - 12285776
Alignment:
Q  137 aaacacattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaa 208  Q
    |||||||||||||||| || |||||||||| ||||   ||||||||||||| ||| |||||||||| |||||    
T  12285847 aaacacattagagtacccaattgttctttcttacattgttatcatcaaaattttatagacattgttttaaaa 12285776  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 24715731 - 24715661
Alignment:
Q  139 acacattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    |||||||||||||| || ||||||||||||| |   ||||||||||||||||| |||||||| | ||||||    
T  24715731 acacattagagtacccaattgttctttcataaattgttatcatcaaaatcttaaagacattgatgtaaaac 24715661  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 35150184 - 35150112
Alignment:
Q  139 acacattagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaactc 211  Q
    ||||| || ||||| || ||||| |||||||||   ||||||||||||  |||||||||||||||||||||||    
T  35150184 acacactaaagtactcaattgttatttcatacattgttatcatcaaaactttagagacattgttctaaaactc 35150112  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 9597349 - 9597395
Alignment:
Q  175 ttatcatcaaaatcttagagacattgttctaaaactcgccttggttc 221  Q
    |||||||||||||||||||||  ||||||||||||||  ||||||||    
T  9597349 ttatcatcaaaatcttagagatgttgttctaaaactcatcttggttc 9597395  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 14761333 - 14761367
Alignment:
Q  175 ttatcatcaaaatcttagagacattgttctaaaac 209  Q
    ||||||||||||| |||||||||||||||||||||    
T  14761333 ttatcatcaaaattttagagacattgttctaaaac 14761367  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 36754950 - 36754885
Alignment:
Q  144 ttagagtacacacttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    ||||||||  || |||||||||||||||   ||||||||||||  ||||||| |||||||||||||    
T  36754950 ttagagtatccaattgttctttcatacattgttatcatcaaaactttagagatattgttctaaaac 36754885  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 20816954 - 20816902
Alignment:
Q  157 ttgttctttcatacaacattatcatcaaaatcttagagacattgttctaaaac 209  Q
    |||||||||||||||   ||||||| ||||  |||||||||||||||||||||    
T  20816954 ttgttctttcatacattgttatcattaaaacattagagacattgttctaaaac 20816902  T

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